Evidence map›Paper›PMID 29888643›Full record

ArticleJournal of biological rhythms2018

Rapid Response and Slow Recovery of the H3K4me3 Epigenomic Marker in the Liver after Light-mediated Phase Advances of the Circadian Clock.

Dmytro Grygoryev, Michael R Rountree, Furaha Rwatambuga, Anna Ohlrich, Ayaka Kukino, Matthew P Butler, Charles N Allen, Mitchell S Turker

Abstract read
In one paragraph

Article in Journal of biological rhythms, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dmytro Grygoryev1 These authors contributed equally to this study.
Michael R Rountree1 These authors contributed equally to this study.
Furaha RwatambugaOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon.
Anna OhlrichOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon.
Ayaka KukinoOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon.
Matthew P ButlerOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon.
Charles N AllenOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon.
Mitchell S TurkerOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon.

Funding

CELLULAR ELECTROPHYSIOLOGY OF THE SUPRACHIASMATIC NUCLEIR01NS036607 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ALLEN, CHARLES N · 1998 to 2015
$4.4M
NINDS NIH HHS R01 NS036607
6 · The paper itself

Abstract

Mammalian tissues display circadian rhythms in transcription, translation, and histone modifications. Here we asked how an advance of the light-dark cycle alters daily rhythms in the liver epigenome at the H3K4me3 (trimethylation of lysine 4 on histone 3) modification, which is found at active and poised gene promoters. H3K4me3 levels were first measured at 4 time points (zeitgeber time [ZT] 3, 8, 15, and 20) during a normal 12L:12D light-dark cycle. Peak levels were observed during the early dark phase at ZT15 and dropped to low levels around lights-on (ZT0) between ZT20 and ZT3. A 6-h phase advance at ZT18 (new lights-on after only 6 h of darkness) led to a transient extension of peak H3K4me3 levels. Although locomotor activity reentrained within a week after the phase advance, H3K4me3 rhythms failed to do so, with peak levels remaining in the light phase at the 1-week recovery time point. Eight weekly phase advances, with 1-week recovery times between each phase advance, further disrupted the H3K4me3 rhythms. Finally, we used the mPer2

Indexed as

Epigenesis, GeneticLightAnimalsCircadian ClocksCircadian RhythmDarknessGene Knock-In TechniquesHistone CodeHistonesLiverMaleMethylationMiceMice, Inbred C57BLPeriod Circadian ProteinsPhotoperiodhistone H3 trimethyl Lys4HistonesPer2 protein, mousePeriod Circadian Proteinscircadian disruptioncircadian epigenomehistone methylationperipheral tissuephase advance

Identifiers

PMID29888643
PMCPMC9241578

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.