Evidence map›Paper›PMID 29888078›Full record

ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2018

Comparison of Different Classifiers with Active Learning to Support Quality Control in Nucleus Segmentation in Pathology Images.

Si Wen, Tahsin M Kurc, Le Hou, Joel H Saltz, Rajarsi R Gupta, Rebecca Batiste, Tianhao Zhao, Vu Nguyen, Dimitris Samaras, Wei Zhu

Open access · greenAbstract read
In one paragraph

Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

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  4. Mixed-Supervised Learning for Cell Classification.Sensors (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Si WenStony Brook University, Stony Brook, NY, USA.
Tahsin M KurcStony Brook University, Stony Brook, NY, USA.
Le HouStony Brook University, Stony Brook, NY, USA.
Joel H SaltzStony Brook University, Stony Brook, NY, USA.
Rajarsi R GuptaStony Brook University, Stony Brook, NY, USA.
Rebecca BatisteStony Brook School of Medicine, Stony Brook, NY, USA.
Tianhao ZhaoStony Brook School of Medicine, Stony Brook, NY, USA.
Vu NguyenStony Brook University, Stony Brook, NY, USA.
Dimitris SamarasStony Brook University, Stony Brook, NY, USA.
Wei ZhuStony Brook University, Stony Brook, NY, USA.
Stony Brook University · USStony Brook School · US

Funding

TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision MedicineU24CA215109 · NCI · UNIV OF ARKANSAS FOR MED SCIS · PI BANERJEE, IMON, PRIOR, FRED WILLIAM · 2017 to 2021
$8.5M
Image Mining for Comparative Analysis of Expression Patterns in Tissue MicroarrayR01LM009239 · NLM · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI FORAN, DAVID J, SALTZ, JOEL H. · 2007 to 2016
$4.5M
NCI NIH HHS U24 CA215109NLM NIH HHS R01 LM009239
6 · The paper itself

Abstract

Segmentation of nuclei in whole slide tissue images is a common methodology in pathology image analysis. Most segmentation algorithms are sensitive to input algorithm parameters and the characteristics of input images (tissue morphology, staining, etc.). Because there can be large variability in the color, texture, and morphology of tissues within and across cancer types (heterogeneity can exist even within a tissue specimen), it is likely that a set of input parameters will not perform well across multiple images. It is, therefore, highly desired, and necessary in some cases, to carry out a quality control of segmentation results. This work investigates the application of machine learning in this process. We report on the application of active learning for segmentation quality assessment for pathology images and compare three classification methods, Support Vector Machine (SVM), Random Forest (RF) and Convolutional Neural Network (CNN), for their performance improvement and efficiency.

Identifiers

PMID29888078
PMCPMC5961826
OpenAlexW2994344014

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.