Evidence map›Paper›PMID 29887730›Full record

ReviewBiomedical informatics insights2018

Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform.

Kavishwar B Wagholikar, Michael Mendis, Pralav Dessai, Javier Sanz, Sindy Law, Micheal Gilson, Stephan Sanders, Mahesh Vangala, Douglas S Bell, Shawn N Murphy

Abstract readReview
In one paragraph

Review in Biomedical informatics insights, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Extending i2b2 into a framework for semantic abstraction of EHR to facilitate rapid development and portability of Health IT applications.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kavishwar B WagholikarMassachusetts General Hospital, Boston, MA, USA.
Michael MendisPartners HealthCare, Boston, MA, USA.
Pralav DessaiUniversity of California, Los Angeles, Los Angeles, CA, USA.
Javier SanzUniversity of California, Los Angeles, Los Angeles, CA, USA.
Sindy LawUniversity of California, San Francisco, San Francisco, CA, USA.
Micheal GilsonUniversity of California, San Francisco, San Francisco, CA, USA.
Stephan SandersUniversity of California, San Francisco, San Francisco, CA, USA.
Mahesh VangalaUMass Medical School, Worcester, MA, USA.
Douglas S BellUniversity of California, Los Angeles, Los Angeles, CA, USA.
Shawn N MurphyMassachusetts General Hospital, Boston, MA, USA.

Funding

UCLA Clinical Translational Science InstituteUL1TR001881 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARLEEN F. BROWN, ARASH NAEIM · 2016 to 2026
$118.1M
Developing i2b2 into a Health Innovation Platform for Clinical Decision Support in the Genomics EraR01HG009174 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI ARONSON, SAMUEL JEFFREY, MACRAE, CALUM A. · 2016 to 2019
$2.9M
A Framework to Enhance Decision Support by Invoking NLP: Methods and ApplicationsR00LM011575 · NLM · MASSACHUSETTS GENERAL HOSPITAL · PI WAGHOLIKAR, KAVISHWAR B. · 2016 to 2018
$749k
NCATS NIH HHS UL1 TR001881NHGRI NIH HHS R01 HG009174NLM NIH HHS R00 LM011575
6 · The paper itself

Abstract

Informatics for Integrating Biology and the Bedside (i2b2) is an open source clinical data analytics platform used at more than 150 institutions for querying patient data. An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. Given the complex architecture of i2b2 installation, creating a working installation of the platform is challenging for new users. This is despite the availability of extensive documentation for i2b2 and access to a large and active mailing list community of i2b2 users. To address this problem, we have created an automated installation package, called i2b2-quickstart, which automatically downloads the latest i2b2 source code and dependencies, and compiles and configures the i2b2 cells to create a functional i2b2 hive installation. This package will serve as a convenient starting point and reference implementation that will facilitate researchers in the installation and exploration of the i2b2 platform.

Indexed as

Biomedical Research/organization & administrationCohort Studies*Data Warehousing*Health Information Exchange*Health Information Interoperability*Information Storage and Retrieval/methods

Identifiers

PMID29887730
PMCPMC5989048

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.