Evidence map›Paper›PMID 29884871›Full record

ArticleNature communications2018

Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague.

Maria A Spyrou, Rezeda I Tukhbatova, Chuan-Chao Wang, Aida Andrades Valtueña, Aditya K Lankapalli, Vitaly V Kondrashin, Victor A Tsybin, Aleksandr Khokhlov, Denise Kühnert, Alexander Herbig and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 190 citations in OpenAlex.

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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Maria A SpyrouMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany. spyrou@shh.mpg.de.ORCID http://orcid.org/0000-0002-3615-3936
Rezeda I TukhbatovaMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.
Chuan-Chao WangMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.ORCID http://orcid.org/0000-0001-9628-0307
Aida Andrades ValtueñaMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.
Aditya K LankapalliMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.
Vitaly V KondrashinLLC "Gefest", Michurina Str. 4, Samara, 443030, Russia.
Victor A TsybinState Institute of Culture, Agency for Preservation of the Historical and Cultural Heritage of the Samara Region, Samara, 443010, Russia.
Aleksandr KhokhlovSamara State University of Social Sciences and Education, Maxim Gorky Str., Samara, 443090, Russia.
Denise KühnertMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.
Alexander HerbigMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany.ORCID http://orcid.org/0000-0003-1176-1166
Kirsten I BosMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany. bos@shh.mpg.de.
Johannes KrauseMax Planck Institute for the Science of Human History, Kahlaische Str. 10, 07745, Jena, Germany. krause@shh.mpg.de.ORCID http://orcid.org/0000-0001-9144-3920
Max Planck Institute for the Science of Human History · DEKazan Federal University · RUSamara State Institute of Culture · RUSamara State University of Social Sciences and Education · RUUniversitätsklinikum Tübingen · DEUniversity Hospital of Zurich · CHXiamen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The origin of Yersinia pestis and the early stages of its evolution are fundamental subjects of investigation given its high virulence and mortality that resulted from past pandemics. Although the earliest evidence of Y. pestis infections in humans has been identified in Late Neolithic/Bronze Age Eurasia (LNBA 5000-3500y BP), these strains lack key genetic components required for flea adaptation, thus making their mode of transmission and disease presentation in humans unclear. Here, we reconstruct ancient Y. pestis genomes from individuals associated with the Late Bronze Age period (~3800 BP) in the Samara region of modern-day Russia. We show clear distinctions between our new strains and the LNBA lineage, and suggest that the full ability for flea-mediated transmission causing bubonic plague evolved more than 1000 years earlier than previously suggested. Finally, we propose that several Y. pestis lineages were established during the Bronze Age, some of which persist to the present day.

Indexed as

AnimalsDental PulpDNA, AncientFlea InfestationsGenome, BacterialHigh-Throughput Nucleotide SequencingHumansPandemicsPhylogenyPlaguePolymorphism, Single NucleotideRussiaSiphonapteraVirulenceYersinia pestisDNA, Ancient

Identifiers

PMID29884871
PMCPMC5993720
OpenAlexW2805217760

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.