Evidence map›Paper›PMID 29884848›Full record

ArticleNature communications2018

Gene flow contributes to diversification of the major fungal pathogen Candida albicans.

Jeanne Ropars, Corinne Maufrais, Dorothée Diogo, Marina Marcet-Houben, Aurélie Perin, Natacha Sertour, Kevin Mosca, Emmanuelle Permal, Guillaume Laval, Christiane Bouchier and 18 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Observational
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Exometabolome variation in the fungal pathogen of humansApplied and environmental microbiology · 2026
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Jeanne RoparsDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.ORCID http://orcid.org/0000-0002-3740-9673
Corinne MaufraisDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.ORCID http://orcid.org/0000-0002-8718-0432
Dorothée DiogoDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Marina Marcet-HoubenDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Aurélie PerinDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Natacha SertourDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Kevin MoscaDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Emmanuelle PermalDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Guillaume LavalCenter for Bioinformatics, BioStatistics and Integrative Biology (C3BI), USR 3756 IP CNRS, Institut Pasteur, 75015, Paris, France.
Christiane BouchierBiomics Pole, CITECH, Institut Pasteur, 75015, Paris, France.
Laurence MaBiomics Pole, CITECH, Institut Pasteur, 75015, Paris, France.
Katja SchwartzDepartment of Genetics, Stanford University Medical School, Stanford, CA, 94305-5120, USA.
Kerstin VoelzSchool of Biosciences and Institute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0003-0973-4353
Robin C MaySchool of Biosciences and Institute of Microbiology and Infection, University of Birmingham, Birmingham, B15 2TT, UK.ORCID http://orcid.org/0000-0001-5364-1838
Julie PoulainCEA, Genoscope, Institut de biologie François Jacob, 91000, Evry, France.
Christophe BattailCEA, Genoscope, Institut de biologie François Jacob, 91000, Evry, France.
Patrick WinckerCEA, Genoscope, Institut de biologie François Jacob, 91000, Evry, France.
Andrew M BormanUK National Mycology Reference Laboratory, Public Health England, Bristol, BS2 8EL, UK.ORCID http://orcid.org/0000-0003-0585-5721
Anuradha ChowdharyDepartment of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi, Dehli, 110007, India.
Shangrong FanDepartment of Obstetrics and Gynecology, Peking University Shenzhen Hospital, PR Guangdong Sheng, 518036, China.
Soo Hyun KimDepartment of Laboratory Medicine, Chonnam National University Medical School, Gwangju, 61469, South Korea.ORCID http://orcid.org/0000-0001-9739-711X
Patrice Le PapeEA1155 - IICiMed, Institut de Recherche en Santé 2, Université de Nantes, 44200, Nantes, France.
Orazio RomeoDepartment of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, 98166, Messina, ME, Italy.ORCID http://orcid.org/0000-0001-5093-2525
Jong Hee ShinDepartment of Laboratory Medicine, Chonnam National University Medical School, Gwangju, 61469, South Korea.ORCID http://orcid.org/0000-0001-9593-476X
Toni GabaldonCentre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, 08003, Barcelona, Spain.
Gavin SherlockDepartment of Genetics, Stanford University Medical School, Stanford, CA, 94305-5120, USA.ORCID http://orcid.org/0000-0002-1692-4983
Marie-Elisabeth BougnouxDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France.
Christophe d'EnfertDepartment of Mycology, Fungal Biology and Pathogenicity Unit, Institut Pasteur, INRA, 75015, Paris, France. christophe.denfert@pasteur.fr.ORCID http://orcid.org/0000-0002-6235-3886

Funding

Genomic Database for Candida AlbicansR01DE015873 · NIDCR · STANFORD UNIVERSITY · PI Gavin J Sherlock · 2004 to 2026
$11.7M
Molecular Characterization of Adaptive EvolutionR01HG003328 · NHGRI · STANFORD UNIVERSITY · PI SHERLOCK, GAVIN J · 2005 to 2015
$4.1M
Defining the yeast transcriptome with custom microarraysR01HG003468 · NHGRI · STANFORD UNIVERSITY · PI SHERLOCK, GAVIN J · 2005 to 2007
$1.3M
European Research Council 614562Medical Research Council G0601171Medical Research Council MR/J008176/1NHGRI NIH HHS R01 HG003328NHGRI NIH HHS R01 HG003468NIDCR NIH HHS R01 DE015873Swiss National Science Foundation 173863Wellcome Trust
6 · The paper itself

Abstract

Elucidating population structure and levels of genetic diversity and recombination is necessary to understand the evolution and adaptation of species. Candida albicans is the second most frequent agent of human fungal infections worldwide, causing high-mortality rates. Here we present the genomic sequences of 182 C. albicans isolates collected worldwide, including commensal isolates, as well as ones responsible for superficial and invasive infections, constituting the largest dataset to date for this major fungal pathogen. Although, C. albicans shows a predominantly clonal population structure, we find evidence of gene flow between previously known and newly identified genetic clusters, supporting the occurrence of (para)sexuality in nature. A highly clonal lineage, which experimentally shows reduced fitness, has undergone pseudogenization in genes required for virulence and morphogenesis, which may explain its niche restriction. Candida albicans thus takes advantage of both clonality and gene flow to diversify.

Indexed as

Gene FlowGenetic VariationCandida albicansCandidiasisGene FrequencyGenes, FungalHumansLinkage DisequilibriumLoss of HeterozygosityPhylogenyPolymorphism, Single NucleotideSpecies SpecificityVirulenceWhole Genome Sequencing

Identifiers

PMID29884848
PMCPMC5993739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.