Evidence map›Paper›PMID 29884789›Full record

ArticleScientific reports2018

Far rapid synthesis of giant DNA in the Bacillus subtilis genome by a conjugation transfer system.

Mitsuhiro Itaya, Mitsuru Sato, Miki Hasegawa, Nobuaki Kono, Masaru Tomita, Shinya Kaneko

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  3. Article
  4. Synthetic biology in plants.Plant biotechnology (Tokyo, Japan) · 2024
    Article
  5. Article
  6. Article
  7. Cross-species microbial genome transfer: a Review.Frontiers in bioengineering and biotechnology · 2023
    Review
  8. Article
  9. Conjugation-Based Genome Engineering inACS synthetic biology · 2022
    Article
  10. Synthetic Genomics From a Yeast Perspective.Frontiers in bioengineering and biotechnology · 2022
    Review
  11. Article
  12. Review
  13. Article
  14. Trans-Kingdom Conjugation within Solid Media fromInternational journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mitsuhiro ItayaInstitute for Advanced Biosciences, Keio University, Nipponkoku, Daihoji, Tsuruoka-shi, Yamagata, 997-0017, Japan. mita2001@sfc.keio.ac.jp.
Mitsuru SatoInstitute for Advanced Biosciences, Keio University, Nipponkoku, Daihoji, Tsuruoka-shi, Yamagata, 997-0017, Japan.
Miki HasegawaInstitute for Advanced Biosciences, Keio University, Nipponkoku, Daihoji, Tsuruoka-shi, Yamagata, 997-0017, Japan.
Nobuaki KonoInstitute for Advanced Biosciences, Keio University, Nipponkoku, Daihoji, Tsuruoka-shi, Yamagata, 997-0017, Japan.ORCID 0000-0001-5960-7956
Masaru TomitaInstitute for Advanced Biosciences, Keio University, Nipponkoku, Daihoji, Tsuruoka-shi, Yamagata, 997-0017, Japan.
Shinya KanekoSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama-shi, Kanagawa, 226-8501, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus subtilis offers a platform for giant DNA synthesis, which is mediated by the connection of overlapping DNA segments called domino DNA, in the cloning locus of the host. The domino method was successfully used to produce DNA fragments as large as 3500 kbp. However, domino DNA is limited to <100 kbp because of size restrictions regarding the transformation (TF) of B. subtilis competent cells. A novel conjugal transfer (CT) method was designed to eliminate the TF size limit. The CT method enables rapid and efficient domino reactions in addition to the transfer of giant DNA molecules of up to 875 kbp to another B. subtilis genome within 4 hours. The combined use of the TF and CT should enable significantly rapid giant DNA production.

Indexed as

Transformation, GeneticBacillus subtilisCloning, MolecularDNADNA ReplicationGenome, BacterialDNA

Identifiers

PMID29884789
PMCPMC5993740

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.