Evidence map›Paper›PMID 29884031›Full record

ArticleThe Journal of chemical physics2018

Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study.

Maksim Kouza, Nguyen Truong Co, Mai Suan Li, Sebastian Kmiecik, Andrzej Kolinski, Andrzej Kloczkowski, Irina Alexandra Buhimschi

Abstract read
In one paragraph

Article in The Journal of chemical physics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Computational Models for the Study of Protein Aggregation.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  4. Assessing the Stability of Biological Fibrils by Molecular-Scale Simulations.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  5. Article
  6. d-Retro Inverso Amylin and the Stability of Amylin Fibrils.Journal of chemical theory and computation · 2020
    Article
  7. Article
  8. Mechanical and thermodynamic properties of AβBeilstein journal of nanotechnology · 2019
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Maksim KouzaFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland.ORCID 0000000217049797
Nguyen Truong CoInstitute of Physics, Polish Academy of Sciences, Lotnikow 32/46, 02-668 Warsaw, Poland.ORCID 0000000156423641
Mai Suan LiInstitute of Physics, Polish Academy of Sciences, Lotnikow 32/46, 02-668 Warsaw, Poland.ORCID 0000000170217916
Sebastian KmiecikFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland.
Andrzej KolinskiFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland.
Andrzej KloczkowskiBattelle Center for Mathematical Medicine, The Research Nationwide Children's Hospital, 575 Children's Crossroad, Columbus, Ohio 43215, USA.
Irina Alexandra BuhimschiDepartment of Pediatrics, The Ohio State University College of Medicine, Columbus, Ohio 43215, USA.

Funding

Misfoldome-centered multiOMICS approach to unravel preeclampsia subphenotypes.R01HD084628 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BUHIMSCHI, IRINA A · 2015 to 2019
$2.6M
NICHD NIH HHS R01 HD084628
6 · The paper itself

Abstract

Fibril formation resulting from protein misfolding and aggregation is a hallmark of several neurodegenerative diseases such as Alzheimer's and Parkinson's diseases. Despite much progress in the understanding of the protein aggregation process, the factors governing fibril formation rates and fibril stability have not been fully understood. Using lattice models, we have shown that the fibril formation time is controlled by the kinetic stability of the fibril state but not by its energy. Having performed all-atom explicit solvent molecular dynamics simulations with the GROMOS43a1 force field for full-length amyloid beta peptides Aβ

Indexed as

Mechanical PhenomenaMolecular Dynamics SimulationAmyloid beta-PeptidesBiomechanical PhenomenaKineticsPeptide FragmentsProtein StabilityProtein Structure, SecondaryAmyloid beta-Peptidesamyloid beta-protein (1-40)amyloid beta-protein (1-42)Peptide Fragments

Identifiers

PMID29884031
PMCPMC5991969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.