Evidence map›Paper›PMID 29883623›Full record

ArticleJournal of biomedical informatics2018

Modeling asynchronous event sequences with RNNs.

Stephen Wu, Sijia Liu, Sunghwan Sohn, Sungrim Moon, Chung-Il Wi, Young Juhn, Hongfang Liu

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. KIT-LSTM: Knowledge-guided Time-aware LSTM for Continuous Clinical Risk Prediction.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022
    Article
  9. Article
  10. Article
  11. Influential Usage of Big Data and Artificial Intelligence in Healthcare.Computational and mathematical methods in medicine · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. Deep Learning-Based Method of Diagnosing Hyperlipidemia and Providing Diagnostic Markers Automatically.Diabetes, metabolic syndrome and obesity : targets and therapy · 2020
    Article
  16. Article
  17. Temporal biomedical data analytics.Journal of biomedical informatics · 2019
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Stephen WuDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, United States. Electronic address: wu.stephen.t@gmail.com.
Sijia LiuDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, United States.
Sunghwan SohnDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, United States.
Sungrim MoonDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, United States.
Chung-Il WiDepartment of Pediatrics, Mayo Clinic, Rochester, MN, United States.
Young JuhnDepartment of Pediatrics, Mayo Clinic, Rochester, MN, United States.
Hongfang LiuDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN, United States.

Funding

Semi-structured Information Retrieval in Clinical Text for Cohort IdentificationR01LM011934 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HERSH, WILLIAM R, LIU, HONGFANG · 2014 to 2025
$5.1M
Secondary use of EMRs for surgical complication surveillanceR01EB019403 · NIBIB · MAYO CLINIC ROCHESTER · PI LIU, HONGFANG, STORLIE, CURTIS · 2015 to 2022
$3.8M
Enhanced Ascertainment of Asthma Status Via Natural Language ProcessingR21AI116839 · NIAID · MAYO CLINIC ROCHESTER · PI JUHN, YOUNG J, WU, STEPHEN TZE-INN · 2015 to 2016
$437k
NIAID NIH HHS R21 AI116839NIBIB NIH HHS R01 EB019403NLM NIH HHS R01 LM011934
6 · The paper itself

Abstract

Sequences of events have often been modeled with computational techniques, but typical preprocessing steps and problem settings do not explicitly address the ramifications of timestamped events. Clinical data, such as is found in electronic health records (EHRs), typically comes with timestamp information. In this work, we define event sequences and their properties: synchronicity, evenness, and co-cardinality; we then show how asynchronous, uneven, and multi-cardinal problem settings can support explicit accountings of relative time. Our evaluation uses the temporally sensitive clinical use case of pediatric asthma, which is a chronic disease with symptoms (and lack thereof) evolving over time. We show several approaches to explicitly incorporating relative time into a recurrent neural network (RNN) model that improve the overall classification of patients into those with no asthma, those with persistent asthma, those in long-term remission, and those who have experienced relapse. We also compare and contrast these results with those in an inpatient intensive care setting.

Indexed as

Electronic Health RecordsNeural Networks, ComputerAsthmaChildChild, PreschoolComputer SimulationHumansInfantIntensive Care UnitsRecurrenceAsthmaDeep learningElectronic health recordsTemporal data

Identifiers

PMID29883623
PMCPMC6103779

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.