Evidence map›Paper›PMID 29883490›Full record

ArticlePloS one2018

Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.

Sara Lomonaco, Matthew A Crawford, Christine Lascols, Ruth E Timme, Kevin Anderson, David R Hodge, Debra J Fisher, Segaran P Pillai, Stephen A Morse, Erum Khan and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Global prevalence of mutation in theFrontiers in microbiology · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Microbiology resource announcements · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Prevalence of Mutated Colistin-ResistantTropical medicine and infectious disease · 2022
    Review
  11. Characterization of Carbapenemase-ProducingAntibiotics (Basel, Switzerland) · 2022
    Article
  12. Evaluation ofJAC-antimicrobial resistance · 2022
    Article
  13. Colistin Resistance and Management of Drug Resistant Infections.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2022
    Review
  14. Article
  15. Article
  16. First Report ofMicroorganisms · 2021
    Article
  17. Insight Into Whole Genome ofFrontiers in microbiology · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Sara LomonacoCenter for Food Safety and Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, United States of America.ORCID 0000-0001-8242-6280
Matthew A CrawfordDivision of Infectious Diseases & International Health, University of Virginia, Charlottesville, Virginia, United States of America.
Christine LascolsNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Ruth E TimmeCenter for Food Safety and Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, United States of America.
Kevin AndersonScience and Technology Directorate, U.S. Department of Homeland Security, Washington, DC, United States of America.
David R HodgeScience and Technology Directorate, U.S. Department of Homeland Security, Washington, DC, United States of America.
Debra J FisherDivision of Infectious Diseases & International Health, University of Virginia, Charlottesville, Virginia, United States of America.
Segaran P PillaiOffice of the Commissioner, U.S. Food & Drug Administration, Silver Spring, Maryland, United States of America.
Stephen A MorseNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Erum KhanDepartment of Pathology and Laboratory Medicine, Aga Khan University, Karachi, Pakistan.
Molly A HughesDivision of Infectious Diseases & International Health, University of Virginia, Charlottesville, Virginia, United States of America.
Marc W AllardCenter for Food Safety and Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, United States of America.
Shashi K SharmaCenter for Food Safety and Applied Nutrition, U.S. Food & Drug Administration, College Park, Maryland, United States of America.
Center for Food Safety and Applied Nutrition · USUniversity of Virginia · USCenters for Disease Control and Prevention · USUnited States Department of Homeland Security · USAga Khan University · PKUnited States Food and Drug Administration · US

Funding

Bacillus anthracis Targets Involved in Chemokine-Mediated Antimicrobial ActivityR01AI099097 · NIAID · UNIVERSITY OF VIRGINIA · PI HUGHES, MOLLY A · 2013 to 2016
$1.6M
Elucidating a unique bacterial strategy that protects susceptible bacteria from antibiotic killing and promotes the genetic transmission of antimicrobial resistanceR21AI139947 · NIAID · UNIVERSITY OF VIRGINIA · PI HUGHES, MOLLY A · 2018 to 2019
$451k
Molecular study of DksA as a smart switch central to Salmonella pathogenesisF32AI108249 · NIAID · UNIVERSITY OF VIRGINIA · PI CRAWFORD, MATTHEW ANTHONY · 2014 to 2016
$155k
NIAID NIH HHS F32 AI108249NIAID NIH HHS R01 AI099097NIAID NIH HHS R21 AI139947
6 · The paper itself

Abstract

The emergence and dissemination of carbapenemases, bacterial enzymes able to inactivate most β-lactam antibiotics, in Enterobacteriaceae is of increasing concern. The concurrent spread of resistance against colistin, an antibiotic of last resort, further compounds this challenge further. Whole-genome sequencing (WGS) can play a significant role in the rapid and accurate detection/characterization of existing and emergent resistance determinants, an essential aspect of public health surveillance and response activities to combat the spread of antimicrobial resistant bacteria. In the current study, WGS data was used to characterize the genomic content of antimicrobial resistance genes, including those encoding carbapenemases, in 10 multidrug-resistant Klebsiella pneumoniae isolates from Pakistan. These clinical isolates represented five sequence types: ST11 (n = 3 isolates), ST14 (n = 3), ST15 (n = 1), ST101 (n = 2), and ST307 (n = 1). Resistance profiles against 25 clinically-relevant antimicrobials were determined by broth microdilution; resistant phenotypes were observed for at least 15 of the 25 antibiotics tested in all isolates except one. Specifically, 8/10 isolates were carbapenem-resistant and 7/10 isolates were colistin-resistant. The blaNDM-1 and blaOXA-48 carbapenemase genes were present in 7/10 and 5/10 isolates, respectively; including 2 isolates carrying both genes. No plasmid-mediated determinants for colistin resistance (e.g. mcr) were detected, but disruptions and mutations in chromosomal loci (i.e. mgrB and pmrB) previously reported to confer colistin resistance were observed. A blaOXA-48-carrying IncL/M-type plasmid was found in all blaOXA-48-positive isolates. The application of WGS to molecular epidemiology and surveillance studies, as exemplified here, will provide both a more complete understanding of the global distribution of MDR isolates and a robust surveillance tool useful for detecting emerging threats to public health.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsCarbapenemsColistinDNA, BacterialDNA Restriction EnzymesDrug Resistance, BacterialHumansKlebsiella InfectionsKlebsiella pneumoniaeMicrobial Sensitivity TestsMolecular TypingPlasmidsWhole Genome SequencingAnti-Bacterial AgentsBacterial ProteinsCarbapenemsColistinDNA, BacterialDNA Restriction Enzymes

Identifiers

PMID29883490
PMCPMC5993281
OpenAlexW2806057627

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.