Evidence map›Paper›PMID 29882741›Full record

ArticleeLife2018

Viral GPCR US28 can signal in response to chemokine agonists of nearly unlimited structural degeneracy.

Timothy F Miles, Katja Spiess, Kevin M Jude, Naotaka Tsutsumi, John S Burg, Jessica R Ingram, Deepa Waghray, Gertrud M Hjorto, Olav Larsen, Hidde L Ploegh and 2 more

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
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  6. Molecular basis for chemokine recognition and activation of XCR1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Review
  8. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
    Article
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Timothy F Miles *Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0001-6591-3271
Katja Spiess *Laboratory for Molecular Pharmacology, Department of Biomedical Sciences, Faculty of Health and Medical Science, University of Copenhagen, Denmark, Europe.
Kevin M Jude *Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-3675-5136
Naotaka Tsutsumi *Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-3617-7145
John S Burg *Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Jessica R IngramDepartment of Cancer Immunology and Virology, Dana Farber Cancer Institute, Boston, United States.
Deepa WaghrayDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.
Gertrud M HjortoLaboratory for Molecular Pharmacology, Department of Biomedical Sciences, Faculty of Health and Medical Science, University of Copenhagen, Denmark, Europe.
Olav LarsenLaboratory for Molecular Pharmacology, Department of Biomedical Sciences, Faculty of Health and Medical Science, University of Copenhagen, Denmark, Europe.ORCID 0000-0001-9054-4690
Hidde L PloeghProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, United States.
Mette M RosenkildeLaboratory for Molecular Pharmacology, Department of Biomedical Sciences, Faculty of Health and Medical Science, University of Copenhagen, Denmark, Europe.
K Christopher GarciaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0001-9273-0278

Funding

Viral GPCR recognition of chemokines and engineered ligandsR01AI125320 · NIAID · STANFORD UNIVERSITY · PI GARCIA, KENAN CHRISTOPHER · 2016 to 2020
$2.0M
Cancer Research Institute Irvington Postdoctoral FellowshipHoward Hughes Medical InstituteNIAID NIH HHS R01 AI125320NIH HHS Director's Pioneer AwardNIH HHS R01 AI125320
6 · The paper itself

Abstract

Human cytomegalovirus has hijacked and evolved a human G-protein-coupled receptor into US28, which functions as a promiscuous chemokine 'sink' to facilitate evasion of host immune responses. To probe the molecular basis of US28's unique ligand cross-reactivity, we deep-sequenced CX3CL1 chemokine libraries selected on 'molecular casts' of the US28 active-state and find that US28 can engage thousands of distinct chemokine sequences, many of which elicit diverse signaling outcomes. The structure of a G-protein-biased CX3CL1-variant in complex with US28 revealed an entirely unique chemokine amino terminal peptide conformation and remodeled constellation of receptor-ligand interactions. Receptor signaling, however, is remarkably robust to mutational disruption of these interactions. Thus, US28 accommodates and functionally discriminates amongst highly degenerate chemokine sequences by sensing the steric bulk of the ligands, which distort both receptor extracellular loops and the walls of the ligand binding pocket to varying degrees, rather than requiring sequence-specific bonding chemistries for recognition and signaling.

Indexed as

Signal TransductionAnimalsChemokine CX3CL1CytomegalovirusGTP-Binding ProteinsHEK293 CellsHigh-Throughput Nucleotide SequencingHumansLigandsModels, MolecularMutationProtein BindingProtein ConformationReceptors, ChemokineReceptors, G-Protein-CoupledViral ProteinsChemokine CX3CL1GTP-Binding ProteinsLigandsReceptors, ChemokineReceptors, G-Protein-CoupledUS28 receptor, CytomegalovirusViral Proteinsbiased signalingbiochemistrychemical biologychemokineE. coliG protein-coupled receptorhumanmembrane protein crystallographymolecular biophysicsS. cerevisiaestructural biologyyeast surface display

Identifiers

PMID29882741
PMCPMC5993540

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.