Evidence map›Paper›PMID 29882479›Full record

ArticleStem cells and development2018

Validation of Osteogenic Properties of Cytochalasin D by High-Resolution RNA-Sequencing in Mesenchymal Stem Cells Derived from Bone Marrow and Adipose Tissues.

Rebekah M Samsonraj, Christopher R Paradise, Amel Dudakovic, Buer Sen, Asha A Nair, Allan B Dietz, David R Deyle, Simon M Cool, Janet Rubin, Andre J van Wijnen

Abstract read
In one paragraph

Article in Stem cells and development, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
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  8. Super-enhancer RNA mNature genetics · 2023
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  19. β-Catenin Preserves the Stem State of Murine Bone Marrow Stromal Cells Through Activation of EZH2.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2020
    Article
  20. Gene regulation through dynamic actin control of nuclear structure.Experimental biology and medicine (Maywood, N.J.) · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Rebekah M Samsonraj1 Department of Orthopedic Surgery, Mayo Clinic , Rochester, Minnesota.
Christopher R Paradise2 Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic Graduate School of Biomedical Sciences , Mayo Clinic, Rochester, Minnesota.
Amel Dudakovic1 Department of Orthopedic Surgery, Mayo Clinic , Rochester, Minnesota.
Buer Sen4 Department of Medicine, University of North Carolina , Chapel Hill, North Carolina.
Asha A Nair5 Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic , Rochester, Minnesota.
Allan B Dietz6 Laboratory Medicine and Pathology, Mayo Clinic , Rochester, Minnesota.
David R Deyle7 Department of Medical Genetics, Mayo Clinic , Rochester, Minnesota.
Simon M Cool8 Glycotherapeutics Group, Institute of Medical Biology , Agency for Science, Technology and Research (A*STAR), Singapore, Singapore .
Janet Rubin3 Center for Regenerative Medicine, Mayo Clinic , Rochester, Minnesota.
Andre J van Wijnen1 Department of Orthopedic Surgery, Mayo Clinic , Rochester, Minnesota.
Mayo Clinic · USMayo Clinic in Florida · USUniversity of North Carolina at Chapel Hill · USWinnMed · US

Funding

Molecular Control of Bone FormationR01AR049069 · NIAMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WESTENDORF, JENNIFER J · 2003 to 2021
$5.8M
In Vivo Gene Targeting to Treat Inherited Bone DiseaseR01AR067707 · NIAMS · MAYO CLINIC ROCHESTER · PI DEYLE, DAVID R · 2015 to 2020
$1.8M
Mechanical regulation of cytoskeleton guides beta-catenin effect on MSC fateR01AR066616 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUBIN, JANET E · 2015 to 2019
$1.7M
Epigenetic control of osteoblast differentiationF32AR066508 · NIAMS · MAYO CLINIC ROCHESTER · PI DUDAKOVIC, AMEL · 2015 to 2017
$185k
National Institute of Arthritis and Musculoskeletal and Skin Diseases F32 AR066508National Institute of Arthritis and Musculoskeletal and Skin Diseases R01 AR049069National Institute of Arthritis and Musculoskeletal and Skin Diseases R01 AR066616NIAMS NIH HHS R01 AR067707
6 · The paper itself

Abstract

Differentiation of mesenchymal stromal/stem cells (MSCs) involves a series of molecular signals and gene transcription events required for attaining cell lineage commitment. Modulation of the actin cytoskeleton using cytochalasin D (CytoD) drives osteogenesis at early timepoints in bone marrow-derived MSCs and also initiates a robust osteogenic differentiation program in adipose tissue-derived MSCs. To understand the molecular basis for these pronounced effects on osteogenic differentiation, we investigated global changes in gene expression in CytoD-treated murine and human MSCs by high-resolution RNA-sequencing (RNA-seq) analysis. A three-way bioinformatic comparison between human adipose tissue-derived MSCs (hAMSCs), human bone marrow-derived MSCs (hBMSCs), and mouse bone marrow-derived MSCs (mBMSCs) revealed significant upregulation of genes linked to extracellular matrix organization, cell adhesion and bone metabolism. As anticipated, the activation of these differentiation-related genes is accompanied by a downregulation of nuclear and cell cycle-related genes presumably reflecting cytostatic effects of CytoD. We also identified eight novel CytoD activated genes-VGLL4, ARHGAP24, KLHL24, RCBTB2, BDH2, SCARF2, ACAD10, HEPH-which are commonly upregulated across the two species and tissue sources of our MSC samples. We selected the Hippo pathway-related VGLL4 gene, which encodes the transcriptional co-factor Vestigial-like 4, for further study because this pathway is linked to osteogenesis. VGLL4 small interfering RNA depletion reduces mineralization of hAMSCs during CytoD-induced osteogenic differentiation. Together, our RNA-seq analyses suggest that while the stimulatory effects of CytoD on osteogenesis are pleiotropic and depend on the biological state of the cell type, a small group of genes including VGLL4 may contribute to MSC commitment toward the bone lineage.

Indexed as

Actin CytoskeletonAdipose TissueAnimalsBone Marrow CellsCytochalasin DGene Expression Regulation, DevelopmentalHigh-Throughput Nucleotide SequencingHumansMesenchymal Stem CellsMiceOsteogenesisTranscription FactorsCytochalasin DTranscription FactorsVGLL4 protein, humanbonecell signalingcytochalasin Dmesenchymal stromal cellosteoblastosteogenesisstem cell

Identifiers

PMID29882479
PMCPMC6096350
OpenAlexW2805789838

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.