Evidence map›Paper›PMID 29882068›Full record

ArticlePlant molecular biology2018

The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.

Rozalynne Samira, Baohua Li, Daniel Kliebenstein, Chunying Li, Eric Davis, Jeffrey W Gillikin, Terri A Long

Abstract read
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In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Identification of Transcription Factors ofPlants (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Comprehensive Analysis of bHLH Transcription Factors inInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Bidirectional lncRNA Transfer betweenInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Review
  19. Photoprotection during iron deficiency is mediated by the bHLH transcription factors PYE and ILR3.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rozalynne SamiraDepartment of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Baohua LiDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.
Daniel KliebensteinDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.
Chunying LiDepartment of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Eric DavisDepartment of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Jeffrey W GillikinDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA.
Terri A LongDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA. talong@ncsu.edu.

Funding

National Institute of Food and Agriculture 101090National Science Foundation 1120937
6 · The paper itself

Abstract

key messageILR3 and PYE function in a regulatory network that modulates GLS accumulation under iron deficiency. The molecular processes involved in the cross talk between iron (Fe) homeostasis and other metabolic processes in plants are poorly understood. In Arabidopsis thaliana the transcription factor IAA-LEUCINE RESISTANT3 (ILR3) regulates iron deficiency response, aliphatic glucosinolate (GLS) biosynthesis and pathogen response. ILR3 is also known to interact with its homolog, POPEYE (PYE), which also plays a role in Fe response. However, little is known about how ILR3 regulates such diverse processes, particularly, via its interaction with PYE. Since GLS are produced as part of a defense mechanism against wounding pathogens, we examined pILR3::β-GLUCURONIDASE expression and found that Fe deficiency enhances the wound-induced expression of ILR3 in roots and that ILR3 is induced in response to the wounding pathogen, sugarbeet root cyst nematode (Heterodera schachtii). We also examined the expression pattern of genes involved in Fe homeostasis and aliphatic GLS biosynthesis in pye-1, ilr3-2 and pye-1xilr3-2 (pxi) mutants and found that ILR3 and PYE differentially regulate the expression of genes involved these processes under Fe deficiency. We measured GLS levels and sugarbeet root cyst nematode infection rates under varying Fe conditions, and found that long-chain GLS levels are elevated in ilr3-2 and pxi mutants. This increase in long-chain GLS accumulation is correlated with elevated nematode resistance in ilr3-2 and pxi mutants in the absence of Fe. Our findings suggest that ILR3 and PYE function in a regulatory network that controls wounding pathogen response in plant roots by modulating GLS accumulation under iron deficiency.

Indexed as

Gene Expression Regulation, PlantStress, PhysiologicalAdaptation, PhysiologicalAnimalsArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDisease ResistanceGlucosinolatesHomeostasisIronPlant DiseasesPlant RootsPlants, Genetically ModifiedTylenchoideaArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGlucosinolatesILR3 protein, ArabidopsisIronArabidopsis thalianaGlucosinolatesHeterodera schachtiiILR3Iron homeostasisPYE

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.