Evidence map›Paper›PMID 29881861›Full record

ArticleOrganic & biomolecular chemistry2018

Synthesis of comb-shaped DNA using a non-nucleosidic branching phosphoramidite.

Satheesh Ellipilli, John D Phillips, Jennifer M Heemstra

Abstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Satheesh EllipilliDepartment of Chemistry, Emory University, 1515 Dickey Drive, Atlanta, Georgia 30322, USA. jen.heemstra@emory.edu.
John D PhillipsDepartment of Internal Medicine, University of Utah, Salt Lake City, Utah 84112, USA.
Jennifer M HeemstraDepartment of Chemistry, Emory University, 1515 Dickey Drive, Atlanta, Georgia 30322, USA. jen.heemstra@emory.edu.ORCID 0000-0002-7691-8526

Funding

Proteomics CoreU54DK110858 · NIDDK · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Anna E Beaudin, JAMES Eric COX · 2016 to 2026
$8.6M
Fluorescent mRNA Labeling Using Self-Alkylating RibozymesR01GM116991 · NIGMS · UNIVERSITY OF UTAH · PI HEEMSTRA, JENNIFER MARGARET · 2016 to 2020
$1.5M
NIDDK NIH HHS U54 DK110858NIGMS NIH HHS R01 GM116991
6 · The paper itself

Abstract

Branched DNAs (bDNAs) having comb-like structures have found wide utility in molecular diagnostics and DNA nanotechnology. bDNAs can be generated either by designing and assembling linear DNA molecules into rigid non-covalent structures or by using an orthogonally protected branching unit to synthesize covalently linked structures. Despite the advantages of the covalently linked structures, use of this motif has been hampered by the challenging synthesis of appropriately protected branching monomers. We report the facile synthesis of a branching monomer having orthogonal DMT and Lev protecting groups using readily available δ-velarolactone and 1,3-diaminopropan-2-ol. Using this branching monomer, a comb-shaped bDNA was synthesized having three different DNA arms. The synthesis and hybridization capability of the bDNA was assessed by fluorescence microscopy using fluorescently labeled complementary and mismatched DNA probes. Convenient access to an orthogonally protected branching monomer is anticipated to accelerate applications of bDNAs in applications including diagnostics, biosensing, gene-profiling, DNA computing, multicolor imaging, and nanotechnology.

Indexed as

Base SequenceChemistry Techniques, SyntheticDNADrug DesignModels, MolecularNucleic Acid ConformationOrganophosphorus CompoundsDNAOrganophosphorus Compoundsphosphoramidite

Identifiers

PMID29881861
PMCPMC6021227

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.