Evidence map›Paper›PMID 29880910›Full record

ArticleThe ISME journal2018

A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria.

Tatiana Yurchenko, Tereza Ševčíková, Pavel Přibyl, Khalid El Karkouri, Vladimír Klimeš, Raquel Amaral, Veronika Zbránková, Eunsoo Kim, Didier Raoult, Lilia M A Santos and 1 more

Abstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  3. Facultative mutualism betweenISME communications · 2026
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  4. 2-Deoxy-4-ACS chemical biology · 2024
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  12. Metagenome diversity illuminates origins of pathogen effectors.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Evolution ofPeerJ · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tatiana YurchenkoFaculty of Science, Department of Biology and Ecology, Life Science Research Centre, University of Ostrava, Chittussiho 10, Ostrava, 710 00, Czech Republic.
Tereza ŠevčíkováFaculty of Science, Department of Biology and Ecology, Life Science Research Centre, University of Ostrava, Chittussiho 10, Ostrava, 710 00, Czech Republic.
Pavel PřibylCentre for Phycology and Biorefinery Research Centre of Competence, Institute of Botany CAS, Dukelská 135, Třeboň, CZ-379 82, Czech Republic.
Khalid El KarkouriUnité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS7278, IRD198, INSERMU1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Aix-Marseille Université, Faculté de Médecine, 27 boulevard Jean Moulin, Marseille cedex 5, 13385, France.
Vladimír KlimešFaculty of Science, Department of Biology and Ecology, Life Science Research Centre, University of Ostrava, Chittussiho 10, Ostrava, 710 00, Czech Republic.
Raquel AmaralDepartment of Life Sciences, Coimbra Collection of Algae (ACOI), University of Coimbra, Coimbra, 3000-456, Portugal.
Veronika ZbránkováFaculty of Science, Department of Biology and Ecology, Life Science Research Centre, University of Ostrava, Chittussiho 10, Ostrava, 710 00, Czech Republic.
Eunsoo KimSackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY, 10024, USA.
Didier RaoultUnité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS7278, IRD198, INSERMU1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Aix-Marseille Université, Faculté de Médecine, 27 boulevard Jean Moulin, Marseille cedex 5, 13385, France.
Lilia M A SantosDepartment of Life Sciences, Coimbra Collection of Algae (ACOI), University of Coimbra, Coimbra, 3000-456, Portugal.
Marek EliášFaculty of Science, Department of Biology and Ecology, Life Science Research Centre, University of Ostrava, Chittussiho 10, Ostrava, 710 00, Czech Republic. marek.elias@osu.cz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rickettsiales are obligate intracellular bacteria originally found in metazoans, but more recently recognized as widespread endosymbionts of various protists. One genus was detected also in several green algae, but reports on rickettsialean endosymbionts in other algal groups are lacking. Here we show that several distantly related eustigmatophytes (coccoid algae belonging to Ochrophyta, Stramenopiles) are infected by Candidatus Phycorickettsia gen. nov., a new member of the family Rickettsiaceae. The genome sequence of Ca. Phycorickettsia trachydisci sp. nov., an endosymbiont of Trachydiscus minutus CCALA 838, revealed genomic features (size, GC content, number of genes) typical for other Rickettsiales, but some unusual aspects of the gene content were noted. Specifically, Phycorickettsia lacks genes for several components of the respiration chain, haem biosynthesis pathway, or c-di-GMP-based signalling. On the other hand, it uniquely harbours a six-gene operon of enigmatic function that we recently reported from plastid genomes of two distantly related eustigmatophytes and from various non-rickettsialean bacteria. Strikingly, the eustigmatophyte operon is closely related to the one from Phycorickettsia, suggesting a gene transfer event between the endosymbiont and host lineages in early eustigmatophyte evolution. We hypothesize an important role of the operon in the physiology of Phycorickettsia infection and a long-term eustigmatophyte-Phycorickettsia coexistence.

Indexed as

Gene Transfer, HorizontalGenomicsOperonRickettsiaceaeStramenopilesSymbiosis

Identifiers

PMID29880910
PMCPMC6092422

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.