Evidence map›Paper›PMID 29880876›Full record

ArticleOncogene2018

Transcription factor activating protein 4 is synthetically lethal and a master regulator of MYCN-amplified neuroblastoma.

Shuobo Boboila, Gonzalo Lopez, Jiyang Yu, Debarshi Banerjee, Angela Kadenhe-Chiweshe, Eileen P Connolly, Jessica J Kandel, Presha Rajbhandari, Jose M Silva, Andrea Califano and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Oncogene, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Molecular regulation and therapeutic targeting ofFrontiers in cell and developmental biology · 2025
    Review
  3. Article
  4. Identification of TNFRSF1A as a potential biomarker for osteosarcoma.Cancer biomarkers : section A of Disease markers · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Shuobo BoboilaDepartment of Pediatrics, Columbia University Medical Center, New York, NY, 10032, USA.
Gonzalo LopezDepartment of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA.ORCID http://orcid.org/0000-0002-5092-1284
Jiyang YuDepartment of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA.
Debarshi BanerjeeDepartment of Pediatrics, Columbia University Medical Center, New York, NY, 10032, USA.
Angela Kadenhe-ChiwesheDepartment of Surgery, Columbia University Medical Center, New York, NY, 10032, USA.
Eileen P ConnollyDepartment of Radiation Oncology, Columbia University Medical Center, New York, NY, 10032, USA.
Jessica J KandelDepartment of Surgery, Section of Pediatric Surgery, University of Chicago Medicine & Biological Sciences, Chicago, IL, 60637, USA.
Presha RajbhandariDepartment of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA.
Jose M SilvaDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Andrea CalifanoDepartment of Systems Biology, Columbia University Medical Center, New York, NY, 10032, USA. ac2248@cumc.columbia.edu.
Darrell J YamashiroDepartment of Pediatrics, Columbia University Medical Center, New York, NY, 10032, USA. dy39@cumc.columbia.edu.
Columbia University Irving Medical Center · USChildren's Hospital of Philadelphia · USIcahn School of Medicine at Mount Sinai · USSt. Jude Children's Research Hospital · USUniversity of Chicago · US

Funding

Predicting Cancer Cell Response to Endogenous and Exogenous Perturbations at the Single Cell LevelR35CA197745 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREA CALIFANO · 2015 to 2026
$11.5M
Systematic Identification and Pharmacological Targeting of Tumor Dependencies for Precision Cancer MedicineU01CA217858 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2017 to 2021
$6.1M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NCI NIH HHS R35 CA197745NCI NIH HHS U01 CA217858NIH HHS S10 OD012351NIH HHS S10 OD021764
6 · The paper itself

Abstract

Despite the identification of MYCN amplification as an adverse prognostic marker in neuroblastoma, MYCN inhibitors have yet to be developed. Here, by integrating evidence from a whole-genome shRNA library screen and the computational inference of master regulator proteins, we identify transcription factor activating protein 4 (TFAP4) as a critical effector of MYCN amplification in neuroblastoma, providing a novel synthetic lethal target. We demonstrate that TFAP4 is a direct target of MYCN in neuroblastoma cells, and that its expression and activity strongly negatively correlate with neuroblastoma patient survival. Silencing TFAP4 selectively inhibits MYCN-amplified neuroblastoma cell growth both in vitro and in vivo, in xenograft mouse models. Mechanistically, silencing TFAP4 induces neuroblastoma differentiation, as evidenced by increased neurite outgrowth and upregulation of neuronal markers. Taken together, our results demonstrate that TFAP4 is a key regulator of MYCN-amplified neuroblastoma and may represent a valuable novel therapeutic target.

Indexed as

AnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell DifferentiationCell Line, TumorCell ProliferationDNA-Binding ProteinsGene Expression Regulation, NeoplasticGene SilencingHumansMiceNeuroblastomaN-Myc Proto-Oncogene ProteinRNA-Binding ProteinsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsDNA-Binding ProteinsN-Myc Proto-Oncogene ProteinREPIN1 protein, humanRNA-Binding Proteins

Identifiers

PMID29880876
PMCPMC6172192
OpenAlexW2806040421

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.