ArticleBMC plant biology2018
Chromosome painting and its applications in cultivated and wild rice.
Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed, 55 citations in OpenAlex.
- Chromosome painting in plants: history and future perspectives.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026Review
- Graphite: painting genomes using a colored de Bruijn graph.NAR genomics and bioinformatics · 2024Article
- Comprehensive mapping of molecular cytogenetic markers in pitaya (Frontiers in plant science · 2024Article
- Insight into chromatin compaction and spatial organization in rice interphase nuclei.Frontiers in plant science · 2024Article
- Striking variation in chromosome structure withinFrontiers in plant science · 2024Article
- Oligonucleotide Fluorescence In Situ Hybridization: An Efficient Chromosome Painting Method in Plants.Plants (Basel, Switzerland) · 2023Review
- Bulked Oligo-FISH for Chromosome Painting and Chromosome Barcoding.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Bioinformatic Prediction of Bulked Oligonucleotide Probes for FISH Using Chorus2.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Reconstruction of karyotypic evolution in Saccharum spontaneum species by comparative oligo-FISH mapping.BMC plant biology · 2022Article
- Accurate Chromosome Identification in the Prunus SubgenusInternational journal of molecular sciences · 2022Article
- Advances in the Molecular Cytogenetics of Bananas, Family Musaceae.Plants (Basel, Switzerland) · 2022Review
- Plant Cytogenetics in the Micronuclei Investigation-The Past, Current Status, and Perspectives.International journal of molecular sciences · 2022Review
- Replication protein A large subunit (RPA1a) limits chiasma formation during rice meiosis.Plant physiology · 2021Article
- Oligo-FISH barcode in beans: a new chromosome identification system.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- BAC- and oligo-FISH mapping reveals chromosome evolution among Vigna angularis, V. unguiculata, and Phaseolus vulgaris.Chromosoma · 2021Article
- Karyotype Differentiation in Cultivated Chickpea Revealed by Oligopainting FluorescenceFrontiers in plant science · 2021Article
- Karyotype diversity in cultivated and wild Indian rice through EMA-based chromosome analysis.Journal of genetics · 2021Article
- Chromosome Painting Provides Insights Into the Genome Structure and Evolution of Sugarcane.Frontiers in plant science · 2021Article
- Development and application of oligonucleotide-based chromosome painting for chromosome 4D of Triticum aestivum L.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020Article
- A universal chromosome identification system for maize and wild Zea species.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020Article
Corrections and comments
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Authors and funding
13 authors at 2 institutions in 2 countries.
Funding
Abstract
backgroundThe chromosome-specific probe is a fundamental tool of chromosome painting and has been commonly applied in mammalian species. The technology, however, has not been widely applied in plants due to a lack of methodologies for probe development. Identification and labeling of a large number of oligonucleotides (oligos) specific to a single chromosome offers us an opportunity to establish chromosome-specific probes in plants. However, never before has whole chromosome painting been performed in rice.
resultsWe developed a pooled chromosome 9-specific probe in rice, which contains 25,000 oligos based on the genome sequence of a japonica rice (Oryza sativa L., AA, 2n = 2× = 24). Chromosome 9 was easily identified in both japonica and indica rice using this chromosome 9-painting probe. The probe was also successfully used to identify and characterize chromosome 9 in additional lines of O. sativa, a translocation line, two new aneuploids associated with chromosome 9 and a wild rice (Oryza eichingeri A. Peter, CC, 2n = 2× = 24).
conclusionThe study reveals that a pool of oligos specific to a chromosome is a useful tool for chromosome painting in rice.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.