Evidence map›Paper›PMID 29879899›Full record

ArticleBMC cell biology2018

The C-terminus of the oncoprotein TGAT is necessary for plasma membrane association and efficient RhoA-mediated signaling.

J van Unen, D Botman, T Yin, Y I Wu, M A Hink, T W J Gadella, M Postma, J Goedhart

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

J van UnenSwammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, P.O. Box 94215, NL, -1090, GE, Amsterdam, The Netherlands.
D BotmanSwammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, P.O. Box 94215, NL, -1090, GE, Amsterdam, The Netherlands.
T YinCenter for Cell Analysis and Modeling, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, CT, 06032-6406, USA.
Y I WuCenter for Cell Analysis and Modeling, University of Connecticut Health Center, 400 Farmington Avenue, Farmington, CT, 06032-6406, USA.
M A HinkSwammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, P.O. Box 94215, NL, -1090, GE, Amsterdam, The Netherlands.
T W J GadellaSwammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, P.O. Box 94215, NL, -1090, GE, Amsterdam, The Netherlands.
M PostmaSwammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, P.O. Box 94215, NL, -1090, GE, Amsterdam, The Netherlands. m.postma@uva.nl.
J GoedhartSwammerdam Institute for Life Sciences, Section of Molecular Cytology, van Leeuwenhoek Centre for Advanced Microscopy, University of Amsterdam, P.O. Box 94215, NL, -1090, GE, Amsterdam, The Netherlands. j.goedhart@uva.nl.ORCID 0000-0002-0630-3825
Netherlands Cancer Institute-Antoni van Leeuwenhoek Hospital · NLUConn Health · US

Funding

Imaging Tools to Visualize and Manipulate Signaling in Minute Spaces (Admin Supp)R01GM117061 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI WU, YI · 2016 to 2020
$2.0M
NIGMS NIH HHS R01 GM117061NWO MiddelgrootNWO-ALW VIDI
6 · The paper itself

Abstract

backgroundRho guanine exchange factors (RhoGEFs) control cellular processes such as migration, adhesion and proliferation. Alternative splicing of the RhoGEF Trio produces TGAT. The RhoGEF TGAT is an oncoprotein with constitutive RhoGEF activity. We investigated whether the subcellular location of TGAT is critical for its RhoGEF activity.

methodsSince plasma membrane associated RhoGEFs are particularly effective at activating RhoA, plasma membrane localization of TGAT was examined. To this end, we developed a highly sensitive image analysis method to quantitatively measure plasma membrane association. The method requires a cytoplasmic marker and a plasma membrane marker, which are co-imaged with the tagged protein of interest. Linear unmixing is performed to determine the plasma membrane and cytoplasmic component in the fluorescence signal of protein of interest.

resultsThe analysis revealed that wild-type TGAT is partially co-localized with the plasma membrane. Strikingly, cysteine TGAT-mutants lacking one or more putative palmitoylation sites in the C-tail, still showed membrane association. In contrast, a truncated variant, lacking the last 15 amino acids, TGAT

conclusionTogether, these results show that membrane association of TGAT is critical for its activity.

Indexed as

Signal TransductionActinsAmino Acid SequenceCell MembraneGuanine Nucleotide Exchange FactorsHeLa CellsHumansMitochondriaMutationOncogene ProteinsPolymerizationProtein Serine-Threonine KinasesProtein TransportrhoA GTP-Binding ProteinStructure-Activity RelationshipSubcellular FractionsActinsGuanine Nucleotide Exchange FactorsMRTFB protein, humanOncogene ProteinsProtein Serine-Threonine KinasesrhoA GTP-Binding ProteinTranscription FactorsTRIO protein, human

Identifiers

PMID29879899
PMCPMC5992656
OpenAlexW2805357537

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.