ArticleAsian-Australasian journal of animal sciences2019
Genetic diversity and phylogenetic relationship analyzed by microsatellite markers in eight Indonesian local duck populations.
Article in Asian-Australasian journal of animal sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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8 citing papers in PubMed.
- Genetic Diversity and Population Structure Analysis of Seven Duck Populations of Bangladesh Using Microsatellite Markers.Veterinary sciences · 2026Article
- Genome-wide in silico characterization, validation, and cross-species transferability of microsatellite markers in Mallard and Muscovy ducks.Journal, genetic engineering & biotechnology · 2023Article
- Production potential of the first generation of selected Pitalah and Bayang ducks as a community economic resource in West Sumatra.Journal of advanced veterinary and animal research · 2023Article
- The phenotypic diversity in the production performance of Alabio ducks (Journal of advanced veterinary and animal research · 2023Article
- Production performance of Alabio ducks (Journal of advanced veterinary and animal research · 2022Article
- Genassemblage 2.0 software facilitates conservation of genetic variation of captively propagated species.Scientific reports · 2020Article
- Assessment of genetic diversity and differentiation among four indigenous Turkish sheep breeds using microsatellites.Archives animal breeding · 2020Article
- Marginal diversity analysis of conservation of Chinese domestic duck breeds.Scientific reports · 2019Article
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Abstract
objectiveAt least eight local duck breeds have been recognized and documented as national germplasm of Indonesia so far. It is necessary to genetically characterize the local duck breeds for aiding conservation and future improvement strategies. Thus, this study was carried out to assess genetic diversity and phylogenetic relationship of eight local duck populations of Indonesia using microsatellite markers.
methodsIn total, 240 individuals (30 individuals each population) from Alabio (AL), Bayang (BY), Magelang (MG), Mojosari (MJ), Pegagan (PG), Pitalah (PT), Rambon (RM), and Turi (TR) duck populations were genotyped using 22 microsatellite markers.
resultsThe results showed a moderate level of genetic diversity among populations, with a total of 153 alleles detected over all loci and populations, ranging from 3 to 22 alleles per locus. Observed (Ho) and expected heterozygosity (He), as well as polymorphism information content over all loci and populations were 0.440, 0.566, and 0.513, respectively. Heterozygote deficiency in the overall populations (FIT = 0.237), was partly due to the heterozygote deficiency within populations (FIS = 0.114) and moderate level of genetic differentiation among populations (FST = 0.137). The most diverse population was MG (He = 0.545) and the least diverse population was AL (He = 0.368). The majority of populations were relatively in heterozygote deficiency (except AL), due to inbreeding. The genetic distances, phylogenetic trees, and principal coordinates analysis concluded that the populations can be grouped into two major clusters, resulting AL, MG, and MJ in one cluster separated from the remaining populations.
conclusionThe present study revealed a considerable genetic diversity of studied populations and thus, proper management strategies should be applied to preserve genetic diversity and prevent loss of alleles.
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