Evidence map›Paper›PMID 29879198›Full record

ArticlePloS one2018

Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate.

Lisa Nonaka, Tatsuya Yamamoto, Fumito Maruyama, Yuu Hirose, Yuki Onishi, Takeshi Kobayashi, Satoru Suzuki, Nobuhiko Nomura, Michiaki Masuda, Hirokazu Yano

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Mobile class A β-lactamase geneMicrobiology spectrum · 2024
    Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lisa NonakaDepartment of Microbiology, Dokkyo Medical University School of Medicine, Mibu, Tochigi, Japan.
Tatsuya YamamotoFaculty of Life and Environmental Sciences, University of Tsukuba, Tennodai, Tsukuba, Japan.
Fumito MaruyamaGraduate School of Medicine, Kyoto University, Kyoto, Japan.
Yuu HiroseDepartment of Environmental and Life Sciences, Toyohashi University of Technology, Tempaku, Toyohashi, Aichi, Japan.
Yuki OnishiCenter for Marine Environmental Studies, Ehime University, Matsuyama, Ehime, Japan.
Takeshi KobayashiGraduate School of Medicine, Ehime University, To-on, Ehime, Japan.
Satoru SuzukiCenter for Marine Environmental Studies, Ehime University, Matsuyama, Ehime, Japan.
Nobuhiko NomuraFaculty of Life and Environmental Sciences, University of Tsukuba, Tennodai, Tsukuba, Japan.
Michiaki MasudaDepartment of Microbiology, Dokkyo Medical University School of Medicine, Mibu, Tochigi, Japan.
Hirokazu YanoFaculty of Life and Environmental Sciences, University of Tsukuba, Tennodai, Tsukuba, Japan.ORCID 0000-0001-5144-3459

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The capture of antimicrobial resistance genes (ARGs) by mobile genetic elements (MGEs) plays a critical role in resistance acquisition for human-associated bacteria. Although aquaculture environments are recognized as important reservoirs of ARGs, intra- and intercellular mobility of MGEs discovered in marine organisms is poorly characterized. Here, we show a new pattern of interspecies ARGs transfer involving a 'non-conjugative' integrative element. To identify active MGEs in a Vibrio ponticus isolate, we conducted whole-genome sequencing of a transconjugant obtained by mating between Escherichia coli and Vibrio ponticus. This revealed integration of a plasmid (designated pSEA1) into the chromosome, consisting of a self-transmissible plasmid backbone of the MOBH group, ARGs, and a 13.8-kb integrative element Tn6283. Molecular genetics analysis suggested a two-step gene transfer model. First, Tn6283 integrates into the recipient chromosome during suicidal plasmid transfer, followed by homologous recombination between the Tn6283 copy in the chromosome and that in the newly transferred pSEA1. Tn6283 is unusual among integrative elements in that it apparently does not encode transfer function and its excision barely generates unoccupied donor sites. Thus, its movement is analogous to the transposition of insertion sequences rather than to that of canonical integrative and conjugative elements. Overall, this study reveals the presence of a previously unrecognized type of MGE in a marine organism, highlighting diversity in the mode of interspecies gene transfer.

Indexed as

AquacultureAquatic OrganismsDrug Resistance, BacterialEscherichia coliGene Transfer, HorizontalR FactorsVibrioWhole Genome Sequencing

Identifiers

PMID29879198
PMCPMC5991714

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.