Evidence map›Paper›PMID 29879195›Full record

ArticlePloS one2018

Characterization of genetic changes associated with daptomycin nonsusceptibility in Staphylococcus aureus.

Zhuo Ma, Erica Lasek-Nesselquist, Jackson Lu, Ryan Schneider, Riddhi Shah, George Oliva, Janice Pata, Kathleen McDonough, Manjunath P Pai, Warren E Rose and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Phenotypic and genetic characterization of daptomycin non-susceptibleFrontiers in cellular and infection microbiology · 2024
    Article
  3. Article
  4. Gausemycin A-ResistantMicroorganisms · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Impact of Glycan Linkage toACS infectious diseases · 2021
    Article
  9. Article
  10. Article
  11. ISFrontiers in microbiology · 2019
    Article
  12. Insights Into the Evolution ofFrontiers in microbiology · 2019
    Article
  13. Daptomycin ResistantFrontiers in microbiology · 2018
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Zhuo MaAlbany College of Pharmacy and Health Sciences, Albany, New York, United States of America.
Erica Lasek-NesselquistWadsworth Center, New York State Department of Health, Albany, New York, United States of America.
Jackson LuAlbany College of Pharmacy and Health Sciences, Albany, New York, United States of America.
Ryan SchneiderWadsworth Center, New York State Department of Health, Albany, New York, United States of America.
Riddhi ShahAlbany College of Pharmacy and Health Sciences, Albany, New York, United States of America.
George OlivaAlbany College of Pharmacy and Health Sciences, Albany, New York, United States of America.
Janice PataWadsworth Center, New York State Department of Health, Albany, New York, United States of America.
Kathleen McDonoughWadsworth Center, New York State Department of Health, Albany, New York, United States of America.
Manjunath P PaiAlbany College of Pharmacy and Health Sciences, Albany, New York, United States of America.
Warren E RoseUniverstiy of Wisconsin-Madison, School of Pharmacy, Madison, Wisconsin, United States of America.
George SakoulasCenter for Immunity, Infection & Inflammation, UCSD School of Medicine, La Jolla, California, United States of America.
Meenakshi MalikAlbany College of Pharmacy and Health Sciences, Albany, New York, United States of America.ORCID 0000-0003-0051-4485
Albany College of Pharmacy and Health Sciences · USNew York State Department of Health · US

Funding

Mechanisms and use of penicillin-binding protein inhibition to optimize cationic peptide anti-MRSA treatmentR01AI132627 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI ROSE, WARREN E · 2017 to 2021
$2.1M
NIAID NIH HHS R01 AI132627
6 · The paper itself

Abstract

The extensive use of daptomycin (DAP) for treatment of methicillin-resistant Staphylococcus aureus (MRSA) infections in the last decade has led to the emergence of DAP non-susceptible (DNS) Staphylococcus aureus strains. A better understanding of the molecular changes underlying DAP-non-susceptibility is required for early diagnosis and intervention with alternate combination therapies. The phenotypic changes associated with DNS strains have been well established. However, the genotypic changes-especially the kinetics of expression of the genes responsible for DAP-non-susceptibility are not well understood. In this study, we used three clinically derived isogenic pairs of DAP-susceptible (DAP-S) and DNS S. aureus strains to study gene expression profiles with the objective of identifying the potential genotypic changes associated with DAP-nonsusceptibility. We determined the expression profiles of genes involved in cell membrane (CM) charge, autolysis, cell wall (CW) synthesis, and penicillin binding proteins in DAP-S and DNS isogenic pairs. Our results demonstrate characteristic expression profiles for mprF, dltABCD, vraS, femB, and pbp2a genes, which are common to all the DNS S. aureus strains tested. Whole genome sequencing of DAP-S and DNS clinical isolates of S. aureus showed non-synonymous mutations in all DNS strains in genes involved in CM charge, CM composition, CW thickness and CW composition. To conclude, this study unravels some of the complex molecular changes involved in the development of DAP-nonsusceptibility by demonstrating distinct differences in gene expression profiles and mutations in the DNS S. aureus strains. This knowledge will aid in rapid identification of DNS S. aureus in clinical settings.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsDaptomycinDrug Resistance, BacterialGene Expression ProfilingGene Expression Regulation, BacterialGenotypeHumansMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsMutationStaphylococcal InfectionsWhole Genome SequencingAnti-Bacterial AgentsBacterial ProteinsDaptomycin

Identifiers

PMID29879195
PMCPMC5991675
OpenAlexW2806386009

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.