Evidence map›Paper›PMID 29879141›Full record

ArticlePloS one2018

A survey of genetic fetal-haemoglobin modifiers in Nigerian patients with sickle cell anaemia.

Titilope A Adeyemo, Oyesola O Ojewunmi, Idat A Oyetunji, Helen Rooks, David C Rees, Adebola O Akinsulie, Alani S Akanmu, Swee Lay Thein, Stephan Menzel

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Single Nucleotide Polymorphisms inDiagnostics (Basel, Switzerland) · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Unique Polymorphisms atJournal of personalized medicine · 2021
    Article
  15. Genotypic Diversity among Angolan Children with Sickle Cell Anemia.International journal of environmental research and public health · 2021
    Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Titilope A AdeyemoDepartment of Haematology and Blood Transfusion, College of Medicine, University of Lagos, Idi-araba, Lagos, Nigeria.
Oyesola O OjewunmiSickle Cell Foundation Nigeria, Idi-araba, Lagos, Nigeria.
Idat A OyetunjiSickle Cell Foundation Nigeria, Idi-araba, Lagos, Nigeria.
Helen RooksSchool of Cancer and Pharmaceutical Sciences, King's College London, London, United Kingdom.
David C ReesSchool of Cancer and Pharmaceutical Sciences, King's College London, London, United Kingdom.
Adebola O AkinsulieDepartment of Paediatrics, College of Medicine, University of Lagos, Idi-araba, Lagos, Nigeria.
Alani S AkanmuDepartment of Haematology and Blood Transfusion, College of Medicine, University of Lagos, Idi-araba, Lagos, Nigeria.ORCID 0000-0001-7424-6060
Swee Lay TheinSickle Cell Branch, National Heart Lung and Blood Institute, National Institute of Health, Bethesda, MD, United States of America.
Stephan MenzelSchool of Cancer and Pharmaceutical Sciences, King's College London, London, United Kingdom.ORCID 0000-0002-1590-9108
King's College London · GBUniversity of Lagos · NGCleen Foundation · NGNational Heart Lung and Blood Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic variants at three quantitative trait loci (QTL) for fetal haemoglobin (HbF), BCL11A, HBS1L-MYB and the β-globin gene cluster, have attracted interest as potential targets of therapeutic strategies for HbF reactivation in sickle cell anaemia (SCA). We carried out the first systematic evaluation of critical single nucleotide polymorphisms at these disease modifier loci in Nigerian patients with SCA. Common variants for BCL11A and HBS1L-MYB were strongly associated with HbF levels. At both loci, secondary association signals were detected, illustrating the mapping resolution attainable in this population. For BCL11A, the two independent sites of association were represented by rs1427407 (primary site, p = 7.0 x 10(-10)) and rs6545816 (secondary site, conditioned on rs1427407: p = 0.02) and for HBS1L-MYB by rs9402686 (HMIP-2B, p = 1.23 x 10(-4)) and rs66650371 (HMIP-2A, p = 0.002). Haplotype analysis revealed similarities in the genetic architecture of BCL11A and HBS1L-MYB in Nigerian patients. Variants at both loci also alleviated anaemia. The variant allele for the γ globin gene promoter polymorphism XmnI-HBG2 was too infrequent in our patients to be evaluated in this relatively small study. Studying the large and diverse SCA patient populations in African countries such as Nigeria will be key for a clearer understanding of how these loci work and for the discovery of new disease modifier genes.

Indexed as

Surveys and QuestionnairesAdolescentAdultAllelesAnemia, Sickle CellChildFemaleFetal HemoglobinGenotypeHumansMaleMiddle AgedNigeriaYoung AdultFetal Hemoglobin

Identifiers

PMID29879141
PMCPMC5991720
OpenAlexW2805928765

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.