Evidence map›Paper›PMID 29878511›Full record

ArticlePlant biotechnology journal2019

QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.

Mingsheng Qi, Wenguang Zheng, Xuefeng Zhao, Jessica D Hohenstein, Yuba Kandel, Seth O'Conner, Yifan Wang, Chuanlong Du, Dan Nettleton, Gustavo C MacIntosh and 4 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. The Brassicaceae-restricted geneFrontiers in plant science · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. RethinkingFrontiers in plant science · 2025
    Article
  16. Review
  17. Horticulture research · 2024
    Article
  18. Orphan geneHorticulture research · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mingsheng QiDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA.
Wenguang ZhengDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA.
Xuefeng ZhaoLaurence H. Baker Center for Bioinformatics and Biological Statistics, Iowa State University, Ames, IA, USA.
Jessica D HohensteinRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA.
Yuba KandelDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA.
Seth O'ConnerDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA.
Yifan WangDepartment of Statistics, Iowa State University, Ames, IA, USA.
Chuanlong DuDepartment of Statistics, Iowa State University, Ames, IA, USA.
Dan NettletonDepartment of Statistics, Iowa State University, Ames, IA, USA.
Gustavo C MacIntoshRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA.
Gregory L TylkaDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA.
Eve S WurteleDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA.
Steven A WhithamDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, IA, USA.
Ling LiDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA.ORCID 0000-0003-2371-6215

Funding

Iowa Soybean AssociationISU Center for Metabolic BiologyISU Research FoundationNSF IOS 1546858NSF MCB-0951170USDA NIFA Hatch project 3808
6 · The paper itself

Abstract

Enhancing the nutritional quality and disease resistance of crops without sacrificing productivity is a key issue for developing varieties that are valuable to farmers and for simultaneously improving food security and sustainability. Expression of the Arabidopsis thaliana species-specific AtQQS (Qua-Quine Starch) orphan gene or its interactor, NF-YC4 (Nuclear Factor Y, subunit C4), has been shown to increase levels of leaf/seed protein without affecting the growth and yield of agronomic species. Here, we demonstrate that overexpression of AtQQS and NF-YC4 in Arabidopsis and soybean enhances resistance/reduces susceptibility to viruses, bacteria, fungi, aphids and soybean cyst nematodes. A series of Arabidopsis mutants in starch metabolism were used to explore the relationships between QQS expression, carbon and nitrogen partitioning, and defense. The enhanced basal defenses mediated by QQS were independent of changes in protein/carbohydrate composition of the plants. We demonstrate that either AtQQS or NF-YC4 overexpression in Arabidopsis and in soybean reduces susceptibility of these plants to pathogens/pests. Transgenic soybean lines overexpressing NF-YC4 produce seeds with increased protein while maintaining healthy growth. Pull-down studies reveal that QQS interacts with human NF-YC, as well as with Arabidopsis NF-YC4, and indicate two QQS binding sites near the NF-YC-histone-binding domain. A new model for QQS interaction with NF-YC is speculated. Our findings illustrate the potential of QQS and NF-YC4 to increase protein and improve defensive traits in crops, overcoming the normal growth-defense trade-offs.

Indexed as

Arabidopsis ProteinsDisease ResistanceGlycine maxHerbivoryPlant DiseasesPlant ImmunityPlants, Genetically ModifiedTranscription FactorsArabidopsis ProteinsNF-YC4 protein, ArabidopsisQQS protein, ArabidopsisTranscription Factorscarbon and nitrogen partitioningNF-YC4orphanpathogenpestQQS

Identifiers

PMID29878511
PMCPMC6330549

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.