Evidence map›Paper›PMID 29878133›Full record

ArticleThe Journal of infectious diseases2018

Highly Attenuated Infection With a Vpr-Deleted Molecular Clone of Human Immunodeficiency Virus-1.

Ayub Ali, Hwee L Ng, Joel N Blankson, Dennis R Burton, Robert W Buckheit, Brian Moldt, Jennifer A Fulcher, F Javier Ibarrondo, Peter A Anton, Otto O Yang

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in The Journal of infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Ayub AliDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles.
Hwee L NgDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles.
Joel N BlanksonCenter for AIDS Research, Department of Medicine, Johns Hopkins Medicine, Baltimore, Maryland.
Dennis R BurtonDepartment of Immunology and Microbial Science, Scripps Research Institute, La Jolla, California.
Robert W BuckheitCenter for AIDS Research, Department of Medicine, Johns Hopkins Medicine, Baltimore, Maryland.
Brian MoldtDepartment of Immunology and Microbial Science, Scripps Research Institute, La Jolla, California.
Jennifer A FulcherDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles.
F Javier IbarrondoDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles.
Peter A AntonDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles.
Otto O YangDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles.
Black AIDS Institute · USScripps Research Institute · USUniversity of California, Los Angeles · USJohns Hopkins Medicine · USJohns Hopkins University · US

Funding

Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANTON, PETER A · 1991 to 2018
$39.9M
Pilot and Feasibility ProgramP30DK041301 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ROZENGURT, JUAN ENRIQUE · 1990 to 2019
$18.0M
GASTROENTEROLOGYT32DK007180 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JENSEN, DENNIS MICHAEL · 1986 to 2025
$10.0M
A mouse viral outgrowth assay for the detection of residual HIV-1 reservoirsR01AI120024 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BLANKSON, JOEL N · 2015 to 2017
$1.2M
NIAID NIH HHS P30 AI028697NIAID NIH HHS P30 AI094189NIAID NIH HHS R01 AI120024NIDDK NIH HHS P30 DK041301NIDDK NIH HHS T32 DK007180
6 · The paper itself

Abstract

A 48-year-old woman was infected with a vpr-defective human immunodeficiency virus (HIV)-1 molecular clone. Seroconversion was markedly delayed, and without treatment she had durably suppressed viremia and normal T-cell levels. Neutralizing antibody and CD8+ T-cell immune responses against HIV-1 were unremarkable. Viral sequences confirmed the source but evolved defective nef, suggesting an unknown mechanistic link to vpr. There were subtle qualitative defects in T and B cells. To our knowledge, this is the only case of human infection with a characterized defective HIV-1 molecular clone, which furthermore recapitulated live-attenuated vaccination in macaque models of HIV-1 vaccine research.

Indexed as

AIDS VaccinesB-LymphocytesCD8-Positive T-LymphocytesCloning, MolecularFemaleGene Products, vprHIV-1HIV InfectionsHumansMiddle AgedVaccinationVaccines, AttenuatedAIDS VaccinesGene Products, vprVaccines, Attenuated

Identifiers

PMID29878133
PMCPMC6151090
OpenAlexW2807176567

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.