Evidence map›Paper›PMID 29876768›Full record

ArticleVirus genes2018

Characterization and functional assay of apsup (Lyxy105) from Lymantria xylina multiple nucleopolyhedrovirus (LyxyMNPV).

Ju-Chun Chang, Zih-Ting Chang, Yu-Feng Huang, Se Jin Lee, Jae Su Kim, Yu-Shin Nai

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ju-Chun ChangDepatment of Biotechnology and Animal Science, National Ilan University, Yilan, Taiwan, ROC.
Zih-Ting ChangDepatment of Biotechnology and Animal Science, National Ilan University, Yilan, Taiwan, ROC.
Yu-Feng HuangGenomic Research Center, Academia Sinica, Taipei, Taiwan, ROC.
Se Jin LeeDepartment of Agricultural Biology, College of Agriculture & Life Sciences, Chonbuk National University, Jeonju, 54596, South Korea.
Jae Su KimDepartment of Agricultural Biology, College of Agriculture & Life Sciences, Chonbuk National University, Jeonju, 54596, South Korea.
Yu-Shin NaiDepatment of Biotechnology and Animal Science, National Ilan University, Yilan, Taiwan, ROC. ysnai@niu.edu.tw.
National Ilan University · TWJeonbuk National University · KRGenomics Research Center, Academia Sinica · TW

Funding

Ministry of Science and Technology, Taiwan 106-2311-B-197-001-
6 · The paper itself

Abstract

The baculoviral anti-apoptotic genes, p35 and iap (inhibitor of apoptosis), play important roles in the initiation of viral infection. Recently, a new anti-apoptotic gene (apoptosis suppressor, apsup) was identified in Lymantria dispar multiple nucleopolyhedrovirus (LdMNPV). An apsup homolog gene, Lyxy105 (ly-apsup), was also predicted in the Lymantria xylina multiple nucleopolyhedrovirus (LyxyMNPV) genome. In this study, we attempt to perform a gene expression analysis and a functional assay of ly-apsup to demonstrate its anti-apoptotic activity and identify the functional domain of this protein. The transcription of the ly-apsup gene region was detected from 12 h post-infection (hpi) and increased significantly after 24-72 hpi. Comparison of the putative amino acid sequences to those of 18 baculoviral homolog proteins showed high amino acid identity to the LdMNPV sequences. Moreover, five conserved protein domains (named as domains I-V) were found. Therefore, protein functional assays were conducted on full-length proteins and different truncation clones. The overexpression of each clone was confirmed by western blot analysis, and the data revealed that a cleavage of ~ 5 kDa at the N-terminal region of the full-length, domains I-IV (1-241) and I-III (1-178), proteins occurred. The results of the functional analysis showed that full-length Ly-apsup and Ly-apsup with domain I (1-70) could inhibit Drosophila-RPR protein (D-RPR)-induced and actinomycin D (ActD)-induced apoptoses. In addition, the domains I and I-II (1-126) regions showed higher anti-apoptotic activity than the other domains in both D-RPR-induced and ActD-induced cell apoptoses. In conclusion, domain I of Ly-apsup may play an important role in the anti-apoptotic activity of this protein; cleavage of the Ly-apsup N-terminus may lead to decreased anti-apoptotic activity.

Indexed as

ApoptosisAnimalsApoptosis Regulatory ProteinsBlotting, WesternCell LineConserved SequenceDrosophilaDrosophila ProteinsGene Expression ProfilingLepidopteraNucleopolyhedrovirusesProtein DomainsProtein Processing, Post-TranslationalSequence Analysis, DNASequence Homology, Amino AcidTime FactorsApoptosis Regulatory ProteinsDrosophila Proteinsrpr protein, DrosophilaViral ProteinsApoptosisApsupDrosophila rprFunctional assayLyxyMNPV

Identifiers

PMID29876768
OpenAlexW2807485773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.