ArticleFunctional & integrative genomics2018
Transcriptome profiling of short-term response to chilling stress in tolerant and sensitive Oryza sativa ssp. Japonica seedlings.
Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.
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Who cites it
21 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- A Comparative Transcriptomic Meta-Analysis Revealed Conserved Key Genes and Regulatory Networks Involved in Drought Tolerance in Cereal Crops.International journal of molecular sciences · 2021Pooled it
- A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Key Genes Involved in the Tolerance to Abiotic Stresses in Rice.International journal of molecular sciences · 2019Pooled it
- Small subunit isoform diversity underlies structural heterogeneity in native plant Rubisco.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Subtilisin-like protease 4 regulates cold tolerance through cell wall modification in rice.Scientific reports · 2025Article
- Exogenous strigolactones alleviate low-temperature stress in peppers seedlings by reducing the degree of photoinhibition.BMC plant biology · 2024Article
- Identification of candidate genes controlling cold tolerance at the early seedling stage from Dongxiang wild rice by QTL mapping, BSA-Seq and RNA-Seq.BMC plant biology · 2024Article
- Characterization and in silico analysis of the domain unknown function DUF568-containing gene family in rice (Oryza sativa L.).BMC genomics · 2023Article
- Characterization of Malectin/Malectin-like Receptor-like Kinase Family Members in Foxtail Millet (Life (Basel, Switzerland) · 2023Article
- Progress and Prospects of the Molecular Basis of Soybean Cold Tolerance.Plants (Basel, Switzerland) · 2023Review
- The small subunit of Rubisco and its potential as an engineering target.Journal of experimental botany · 2023Review
- PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples.Nucleic acids research · 2023Article
- Integrative transcriptomic analysis deciphering the role of rice bHLH transcription factor Os04g0301500 in mediating responses to biotic and abiotic stresses.Frontiers in plant science · 2023Article
- What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?Molecular ecology · 2022Article
- Low Temperature Stress Tolerance: An Insight Into the Omics Approaches for Legume Crops.Frontiers in plant science · 2022Review
- Time-course transcriptome and WGCNA analysis revealed the drought response mechanism of two sunflower inbred lines.PloS one · 2022Article
- Application of vigor indexes to evaluate the cold tolerance in rice seeds germination conditioned in plant extract.Scientific reports · 2021Article
- Article
- Transcriptome analysis ofPeerJ · 2021Article
- Transcriptomic Profiling of Young Cotyledons Response to Chilling Stress in Two Contrasting Cotton (International journal of molecular sciences · 2020Article
- Comparative Transcriptome-Based Mining and Expression Profiling of Transcription Factors Related to Cold Tolerance in Peanut.International journal of molecular sciences · 2020Article
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Authors and funding
9 authors.
Funding
Abstract
Low temperature is a major factor limiting rice growth and yield, and seedling is one of the developmental stages at which sensitivity to chilling stress is higher. Tolerance to chilling is a complex quantitative trait, so one of the most effective approaches to identify genes and pathways involved is to compare the stress-induced expression changes between tolerant and sensitive genotypes. Phenotypic responses to chilling of 13 Japonica cultivars were evaluated, and Thaibonnet and Volano were selected as sensitive and tolerant genotypes, respectively. To thoroughly profile the short-term response of the two cultivars to chilling, RNA-Seq was performed on Thaibonnet and Volano seedlings after 0 (not stressed), 2, and 10 h at 10 °C. Differential expression analysis revealed that the ICE-DREB1/CBF pathway plays a primary role in chilling tolerance, mainly due to some important transcription factors involved (some of which had never been reported before). Moreover, the expression trends of some genes that were radically different between Thaibonnet and Volano (i.e., calcium-dependent protein kinases OsCDPK21 and OsCDPK23, cytochrome P450 monooxygenase CYP76M8, etc.) suggest their involvement in low temperature tolerance too. Density of differentially expressed genes along rice genome was determined and linked to the position of known QTLs: remarkable co-locations were reported, delivering an overview of genomic regions determinant for low temperature response at seedling stage. Our study contributes to a better understanding of the molecular mechanisms underlying rice response to chilling and provides a solid background for development of low temperature-tolerant germplasm.
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