Evidence map›Paper›PMID 29876408›Full record

ArticleData in brief2018

Small RNA data set that includes tRNA-derived fragments from Jurkat cells treated with camptothecin.

Mehmet Ilyas Cosacak, Ipek Erdogan, Ayten Nalbant, Bunyamin Akgul

Abstract read
In one paragraph

Article in Data in brief, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mehmet Ilyas CosacakIzmir Institute of Technology, Department of Molecular Biology and Genetics, Gulbahcekoyu, Urla, 35430 Izmir, Turkey.
Ipek ErdoganIzmir Institute of Technology, Department of Molecular Biology and Genetics, Gulbahcekoyu, Urla, 35430 Izmir, Turkey.
Ayten NalbantIzmir Institute of Technology, Department of Molecular Biology and Genetics, Gulbahcekoyu, Urla, 35430 Izmir, Turkey.
Bunyamin AkgulIzmir Institute of Technology, Department of Molecular Biology and Genetics, Gulbahcekoyu, Urla, 35430 Izmir, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this article, we report a small RNA data set obtained from human T cell acute leukemia Jurkat cells, which were treated with the universal apoptotic agent camptothecin. Based on the Annexin-V labeling pattern, we sorted two Jurkat subpopulations in treated cells: one that is sensitive to the drug and the other being relatively more resistant. We report new original data that include the frequency of tRNA-derived fragments (tRF) in drug-sensitive and resistant cells. We also present partially analyzed data to show the origin of reads on tRNAs as well as the borders of the fragments. We believe that this data can benefit the science community working in the field of tRF and/or apoptosis.

Identifiers

PMID29876408
PMCPMC5988338

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.