Evidence map›Paper›PMID 29876014›Full record

ArticleOncotarget2018

Multi-omics profiling reveals a distinctive epigenome signature for high-risk acute promyelocytic leukemia.

Abhishek A Singh, Francesca Petraglia, Angela Nebbioso, Guoqiang Yi, Mariarosaria Conte, Sergio Valente, Amit Mandoli, Lucia Scisciola, Rik Lindeboom, Hinri Kerstens and 21 more

Abstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Abhishek A SinghDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Francesca PetragliaDipartimento di Biochimica Biofisica e Patologia Generale, Università degli Studi della Campania Luigi Vanvitelli, Napoli, Italy.
Angela NebbiosoDipartimento di Biochimica Biofisica e Patologia Generale, Università degli Studi della Campania Luigi Vanvitelli, Napoli, Italy.
Guoqiang YiDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Mariarosaria ConteIRCCS SDN, Napoli Via E. Gianturco, Napoli, Italy.
Sergio ValenteDipartimento di Chimica e Tecnologie del Farmaco 'Sapienza' Università, Roma, Italy.
Amit MandoliDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Lucia ScisciolaDipartimento di Biochimica Biofisica e Patologia Generale, Università degli Studi della Campania Luigi Vanvitelli, Napoli, Italy.
Rik LindeboomDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Hinri KerstensDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Eva M Janssen-MegensDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Farzin PourfarzadDepartment of Blood Cell Research, Sanquin Research and Landsteiner Laboratory, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Ehsan HabibiDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Kim BerentsenDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Bowon KimDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Colin LogieDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Simon HeathCentro Nacional de Análisis Genómico, Barcelona, Spain.
Albertus T J WierengaDepartment of Hematology, University of Groningen and University Medical Center Groningen, Groningen, Netherlands.
Laura ClarkeEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom.
Joop H JansenDepartment of Laboratory Medicine, Radboud UMC, Nijmegen, Netherlands.
Taco KuijpersDepartment of Blood Cell Research, Sanquin Research and Landsteiner Laboratory, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Marie Laure YaspoMax Planck Institute for Molecular Genetics, Berlin, Germany.
Veronique Della ValleINSERM U1170, Universtité Paris-Saclay, Institut Gustave Roussy, Equipe Labellisée Ligue Nationale Contre le Cancer (LNCC), Paris, France.
Olivier BernardINSERM U1170, Universtité Paris-Saclay, Institut Gustave Roussy, Equipe Labellisée Ligue Nationale Contre le Cancer (LNCC), Paris, France.
Ivo GutCentro Nacional de Análisis Genómico, Barcelona, Spain.
Edo VellengaDepartment of Hematology, University of Groningen and University Medical Center Groningen, Groningen, Netherlands.
Hendrik G StunnenbergDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.
Antonello MaiDipartimento di Chimica e Tecnologie del Farmaco 'Sapienza' Università, Roma, Italy.
Lucia AltucciDipartimento di Biochimica Biofisica e Patologia Generale, Università degli Studi della Campania Luigi Vanvitelli, Napoli, Italy.
Joost H A MartensDepartment of Molecular Biology, Radboud University, Nijmegen, Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenomic alterations have been associated with both pathogenesis and progression of cancer. Here, we analyzed the epigenome of two high-risk APL (hrAPL) patients and compared it to non-high-risk APL cases. Despite the lack of common genetic signatures, we found that human hrAPL blasts from patients with extremely poor prognosis display specific patterns of histone H3 acetylation, specifically hyperacetylation at a common set of enhancer regions. In addition, unique profiles of the repressive marks H3K27me3 and DNA methylation were exposed in high-risk APLs. Epigenetic comparison with low/intermediate-risk APLs and AMLs revealed hrAPL-specific patterns of histone acetylation and DNA methylation, suggesting these could be further developed into markers for clinical identification. The epigenetic drug MC2884, a newly generated general HAT/EZH2 inhibitor, induces apoptosis of high-risk APL blasts and reshapes their epigenomes by targeting both active and repressive marks. Together, our analysis uncovers distinctive epigenome signatures of hrAPL patients, and provides proof of concept for use of epigenome profiling coupled to epigenetic drugs to 'personalize' precision medicine.

Indexed as

acute promyelocytic leukemia (APL)epi-drugsepigenomehigh-risk APLPML-RARA

Identifiers

PMID29876014
PMCPMC5986653

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.