ArticleFrontiers in plant science2018
Pedigree-Based Deciphering of Genome-Wide Conserved Patterns in an Elite Potato Parental Line.
Article in Frontiers in plant science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Tracing modern breeding introgressions in European potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Rate of double reduction and genetic variability in yield, quality, and senescence related traits in tetraploid potato (Frontiers in plant science · 2025Article
- Dissection of the Pearl of Csaba pedigree identifies key genomic segments related to early ripening in grape.Plant physiology · 2023Article
- Article
- Phenotypic variability and genetic diversity analysis of cultivated potatoes in China.Frontiers in plant science · 2022Article
- Multiple Mechanisms Drive the Evolutionary Adaptation ofJournal of fungi (Basel, Switzerland) · 2021Article
- Late Blight Resistance Evaluation and Genome-Wide Assessment of Genetic Diversity in Wild and Cultivated Potato Species.Frontiers in plant science · 2021Article
- Effector Avr4 inFrontiers in microbiology · 2021Article
- Comparative proteomics of three Chinese potato cultivars to improve understanding of potato molecular response to late blight disease.BMC genomics · 2020Article
- Article
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Authors and funding
8 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Elite parental lines are more likely to breed fine varieties, but knowledge about elite parents and their genetic backgrounds is limited. In this paper, we investigated the pedigree relationships of potato varieties bred worldwide and in China. Several elite parents were identified, and these parents were more frequently used as parents in breeding programs across different time periods and countries. We next used 2b-RAD, a reduced-representation sequencing method, to genotype the elite parent Mira and 24 of its offspring. These cultivars span 5 generations, making this lineage the longest continuous pedigree among Chinese bred potatoes. A total of 47,314 tetraploid single nucleotide polymorphisms (SNPs) identified by FreeBayes were used to trace the conserved segments of the Mira genome. The conserved segments had identical or similar allele-specific SNPs across the analyzed genotypes. In Mira, 3,788 segments comprising over 10,000 bp, or 20.8% of the genome, were defined as conserved segments. These segments contain genes involved in crucial biological processes that are of special interest to breeders. These regions, which have been conserved across generations of highly selective breeding, may be helpful for further breeding and performing genome-wide breeding by design.
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