Evidence map›Paper›PMID 29875445›Full record

ArticleNature communications2018

Vms1p is a release factor for the ribosome-associated quality control complex.

Olga Zurita Rendón, Eric K Fredrickson, Conor J Howard, Jonathan Van Vranken, Sarah Fogarty, Neal D Tolley, Raghav Kalia, Beatriz A Osuna, Peter S Shen, Christopher P Hill and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 102 citations in OpenAlex.

  1. Review
  2. Article
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  5. Review
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  7. Article
  8. Mitochondrial protein import stress.Nature cell biology · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Olga Zurita RendónHoward Hughes Medical Institute, Chevy Chase, MD, 20815-6789, USA.
Eric K FredricksonDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA.
Conor J HowardDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0001-5375-6248
Jonathan Van VrankenDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA.
Sarah FogartyHoward Hughes Medical Institute, Chevy Chase, MD, 20815-6789, USA.
Neal D TolleyMolecular Medicine Program, University of Utah, Salt Lake City, UT, 84112, USA.
Raghav KaliaDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA.
Beatriz A OsunaDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, 94158, USA.
Peter S ShenDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA.ORCID http://orcid.org/0000-0002-6256-6910
Christopher P HillDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA.
Adam FrostDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA. adam.frost@ucsf.edu.ORCID http://orcid.org/0000-0003-2231-2577
Jared RutterHoward Hughes Medical Institute, Chevy Chase, MD, 20815-6789, USA. rutter@biochem.utah.edu.ORCID http://orcid.org/0000-0002-2710-9765
University of Utah · USHoward Hughes Medical Institute · USQB3 · USUniversity of California, San Francisco · US

Funding

RESEARCH TRAINING IN HEMATOLOGYT32DK007115 · NIDDK · UNIVERSITY OF UTAH · PI LEIBOLD, ELIZABETH ANN, PRCHAL, JOSEF T · 1986 to 2020
$8.4M
Toward Atomic Resolution of Membranes and Membrane-Associated MachinesDP2GM110772 · NIGMS · UNIVERSITY OF UTAH · PI FROST, ADAM · 2013 to 2013
$2.2M
An Interdisciplinary Approach to Stress-Induced Mitochondrial Quality ControlR01GM115129 · NIGMS · UNIVERSITY OF UTAH · PI HILL, CHRISTOPHER P., RUTTER, JARED P · 2015 to 2018
$1.5M
NIDDK NIH HHS T32 DK007115NIGMS NIH HHS DP2 GM110772NIGMS NIH HHS R01 GM115129
6 · The paper itself

Abstract

Eukaryotic cells employ the ribosome-associated quality control complex (RQC) to maintain homeostasis despite defects that cause ribosomes to stall. The RQC comprises the E3 ubiquitin ligase Ltn1p, the ATPase Cdc48p, Rqc1p, and Rqc2p. Upon ribosome stalling and splitting, the RQC assembles on the 60S species containing unreleased peptidyl-tRNA (60S:peptidyl-tRNA). Ltn1p and Rqc1p facilitate ubiquitination of the incomplete nascent chain, marking it for degradation. Rqc2p stabilizes Ltn1p on the 60S and recruits charged tRNAs to the 60S to catalyze elongation of the nascent protein with carboxy-terminal alanine and threonine extensions (CAT tails). By mobilizing the nascent chain, CAT tailing can expose lysine residues that are hidden in the exit tunnel, thereby supporting efficient ubiquitination. If the ubiquitin-proteasome system is overwhelmed or unavailable, CAT-tailed nascent chains can aggregate in the cytosol or within organelles like mitochondria. Here we identify Vms1p as a tRNA hydrolase that releases stalled polypeptides engaged by the RQC.

Indexed as

Amino Acid SequenceCarrier ProteinsMultiprotein ComplexesPeptidesProtein BindingProtein BiosynthesisQuality ControlRibosome Subunits, Large, EukaryoticRNA-Binding ProteinsRNA, Transfer, Amino AcylSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidUbiquitin-Protein LigasesValosin Containing ProteinCarrier ProteinsCDC48 protein, S cerevisiaeLtn1 protein, S cerevisiaeMultiprotein ComplexesPeptidesRNA-Binding ProteinsRNA, Transfer, Amino AcylRqc1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTae2 protein, S cerevisiaetRNA, peptidyl-Ubiquitin-Protein LigasesValosin Containing ProteinVms1 protein, S cerevisiae

Identifiers

PMID29875445
PMCPMC5989216
OpenAlexW2949928712

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.