Evidence map›Paper›PMID 29875188›Full record

ArticleJournal of clinical microbiology2018

Control of Artifactual Variation in Reported Intersample Relatedness during Clinical Use of a Mycobacterium tuberculosis Sequencing Pipeline.

David H Wyllie, Nicholas Sanderson, Richard Myers, Tim Peto, Esther Robinson, Derrick W Crook, E Grace Smith, A Sarah Walker

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The Lancet regional health. Europe · 2022
    Article
  6. Article
  7. High precisionGenome research · 2020
    Article
  8. Review
  9. Article
  10. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David H WyllieNuffield Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom david.wyllie@ndm.ox.ac.uk.
Nicholas SandersonNuffield Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.
Richard MyersDepartment of Bioinformatics, Public Health England, London, United Kingdom.
Tim PetoNuffield Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.
Esther RobinsonPublic Health England National Regional Mycobacteriology Laboratory North and Midlands, Heartlands Hospital, Birmingham, United Kingdom.
Derrick W CrookNuffield Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.
E Grace SmithPublic Health England National Regional Mycobacteriology Laboratory North and Midlands, Heartlands Hospital, Birmingham, United Kingdom.
A Sarah WalkerNuffield Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.

Funding

Department of Health HICF-T5-358Wellcome TrustWellcome Trust WT098615/Z/12/Z
6 · The paper itself

Abstract

Contact tracing requires reliable identification of closely related bacterial isolates. When we noticed the reporting of artifactual variation between

Indexed as

DNA, BacterialGenetic VariationGenome, BacterialGenomicsHigh-Throughput Nucleotide SequencingHumansMolecular EpidemiologyMycobacterium tuberculosisSequence Analysis, DNATuberculosisDNA, BacterialartifactMycobacterium tuberculosisreference mappingrelatednesssingle nucleotide variation

Identifiers

PMID29875188
PMCPMC6062814

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.