Evidence map›Paper›PMID 29874280›Full record

ArticlePloS one2018

Highly structured genetic diversity of Bixa orellana var. urucurana, the wild ancestor of annatto, in Brazilian Amazonia.

Gabriel Dequigiovanni, Santiago Linorio Ferreyra Ramos, Alessandro Alves-Pereira, Eliane Gomes Fabri, Doriane Picanço-Rodrigues, Charles Roland Clement, Paul Gepts, Elizabeth Ann Veasey

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Gabriel DequigiovanniDepartamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo (ESALQ-USP), Piracicaba, São Paulo, Brasil.
Santiago Linorio Ferreyra RamosInstituto de Ciências Exatas e Tecnologia em Itacoatiara, Universidade Federal do Amazonas, Itacoatiara, Amazonas, Brasil.
Alessandro Alves-PereiraDepartamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo (ESALQ-USP), Piracicaba, São Paulo, Brasil.
Eliane Gomes FabriCentro de Horticultura, Instituto Agronômico de Campinas, Campinas, São Paulo, Brasil.
Doriane Picanço-RodriguesInstituto de Ciências Biológicas, Universidade Federal do Amazonas (ICB-UFAM), Manaus, Amazonas, Brasil.
Charles Roland ClementInstituto Nacional de Pesquisas da Amazônia (INPA), Manaus, Amazonas, Brasil.
Paul GeptsDepartment of Plant Sciences, University of California, Davis, California, United States of America.
Elizabeth Ann VeaseyDepartamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo (ESALQ-USP), Piracicaba, São Paulo, Brasil.ORCID 0000-0002-7574-2020

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Annatto (Bixa orellana L.) is a tropical American crop, commercially valuable due to its application in the food and cosmetics industries as a natural dye. The wild ancestor of cultivated annatto is B. orellana var. urucurana. Although never cultivated, this variety occurs in open forests and anthropogenic landscapes, and is always associated with riparian environments. In this study, we evaluated the genetic diversity and structure of B. orellana var. urucurana populations in Brazilian Amazonia using 16 microsatellite loci. We used Ecological Niche Modeling (ENM) to characterize the potential geographical range of this variety in northern South America. We analyzed 170 samples from 10 municipalities in the states of Rondônia, Pará and Roraima. A total of 194 alleles was observed, with an average of 12.1 alleles per locus. Higher levels of expected (HE) than observed (HO) heterozygosities were found for all populations. Bayesian analysis, Neighbor-Joining dendrograms and PCAs suggest the existence of three strongly structured groups of populations. A strong and positive correlation between genetic and geographic distances was found, suggesting that genetic differentiation might be caused by geographic isolation. From species distribution modelling, we detected that South Rondônia, Madre di Dios River basin, Llanos de Mojos, Llanos de Orinoco and eastern Ecuador are highly suitable areas for wild annatto to occur, providing additional targets for future exploration and conservation. Climatic adaptation analyses revealed strong differentiation among populations, suggesting that precipitation plays a key role in wild annatto's current and potential distribution patterns.

Indexed as

Conservation of Natural ResourcesAcclimatizationBixaceaeBrazilCarotenoidsForestsGenetic VariationMicrosatellite RepeatsPlant ExtractsannattoCarotenoidsPlant Extracts

Identifiers

PMID29874280
PMCPMC5991381

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.