Evidence map›Paper›PMID 29874235›Full record

ArticlePLoS computational biology2018

Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domain.

Kumaresan Jayaraman, Alex N Morley, Daniel Szöllősi, Tsjerk A Wassenaar, Harald H Sitte, Thomas Stockner

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structures and membrane interactions of native serotonin transporter in complexes with psychostimulants.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Review
  8. Review
  9. Article
  10. Phosphatidylinositol 4,5-bisphosphate (PIPCommunications biology · 2022
    Article
  11. Review
  12. SLC6 transporter oligomerization.Journal of neurochemistry · 2021
    Review
  13. Article
  14. Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.Advances in experimental medicine and biology · 2021
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kumaresan JayaramanMedical University of Vienna Center for Physiology and Pharmacology, Institute of Pharmacology, Vienna, Austria.
Alex N MorleyMedical University of Vienna Center for Physiology and Pharmacology, Institute of Pharmacology, Vienna, Austria.
Daniel SzöllősiMedical University of Vienna Center for Physiology and Pharmacology, Institute of Pharmacology, Vienna, Austria.ORCID 0000-0003-4641-3065
Tsjerk A WassenaarGroningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.
Harald H SitteMedical University of Vienna Center for Physiology and Pharmacology, Institute of Pharmacology, Vienna, Austria.ORCID 0000-0002-1339-7444
Thomas StocknerMedical University of Vienna Center for Physiology and Pharmacology, Institute of Pharmacology, Vienna, Austria.ORCID 0000-0002-7071-8283
Medical University of Vienna · ATUniversity of Groningen · NL

Funding

Austrian Science Fund FWF F 3506Austrian Science Fund FWF F 3524Austrian Science Fund FWF W 1232
6 · The paper itself

Abstract

The human dopamine transporter (hDAT) is located on presynaptic neurons, where it plays an essential role in limiting dopaminergic signaling by temporarily curtailing high neurotransmitter concentration through rapid re-uptake. Transport by hDAT is energized by transmembrane ionic gradients. Dysfunction of this transporter leads to disease states, such as Parkinson's disease, bipolar disorder or depression. It has been shown that hDAT and other members of the monoamine transporter family exist in oligomeric forms at the plasma membrane. Several residues are known to be involved in oligomerization, but interaction interfaces, oligomer orientation and the quarternary arrangement in the plasma membrane remain poorly understood. Here we examine oligomeric forms of hDAT using a direct approach, by following dimerization of two randomly-oriented hDAT transporters in 512 independent simulations, each being 2 μs in length. We employed the DAFT (docking assay for transmembrane components) approach, which is an unbiased molecular dynamics simulation method to identify oligomers, their conformations and populations. The overall ensemble of a total of >1 ms simulation time revealed a limited number of symmetric and asymmetric dimers. The identified dimer interfaces include all residues known to be involved in dimerization. Importantly, we find that the surface of the bundle domain is largely excluded from engaging in dimeric interfaces. Such an interaction would typically lead to inhibition by stabilization of one conformation, while substrate transport relies on a large scale rotation between the inward-facing and the outward-facing state.

Indexed as

Protein MultimerizationDopamine Plasma Membrane Transport ProteinsHumansMolecular Dynamics SimulationProtein DomainsDopamine Plasma Membrane Transport Proteins

Identifiers

PMID29874235
PMCPMC6005636
OpenAlexW2807485763

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.