Evidence map›Paper›PMID 29873607›Full record

ArticleMultiple sclerosis (Houndmills, Basingstoke, England)2019

Linkage analysis and whole exome sequencing identify a novel candidate gene in a Dutch multiple sclerosis family.

Julia Y Mescheriakova, Annemieke Jmh Verkerk, Najaf Amin, André G Uitterlinden, Cornelia M van Duijn, Rogier Q Hintzen

Open access · hybridAbstract read
In one paragraph

Article in Multiple sclerosis (Houndmills, Basingstoke, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Whole-Exome Sequencing Implicates theFrontiers in cell and developmental biology · 2021
    Article
  11. Article
  12. Frontiers in genetics · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Julia Y MescheriakovaDepartment of Neurology, MS Center ErasMS, Erasmus Medical Centre, Rotterdam, The Netherlands.
Annemieke Jmh VerkerkDepartment of Internal Medicine, Erasmus Medical Centre, Rotterdam, The Netherlands.
Najaf AminDepartment of Epidemiology, Erasmus Medical Centre, Rotterdam, the Netherlands.
André G UitterlindenDepartment of Internal Medicine, Erasmus Medical Centre, Rotterdam, The Netherlands.
Cornelia M van DuijnDepartment of Epidemiology, Erasmus Medical Centre, Rotterdam, the Netherlands.
Rogier Q HintzenDepartment of Neurology, MS Center ErasMS, Erasmus Medical Centre, Rotterdam, The Netherlands.
Erasmus University Rotterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMultiple sclerosis (MS) is a complex disease resulting from the joint effect of many genes. It has been speculated that rare variants might explain part of the missing heritability of MS.

objectiveTo identify rare coding genetic variants by analyzing a large MS pedigree with 11 affected individuals in several generations.

methodsGenome-wide linkage screen and whole exome sequencing (WES) were performed to identify novel coding variants in the shared region(s) and in the known 110 MS risk loci. The candidate variants were then assessed in 591 MS patients and 3169 controls.

resultsSuggestive evidence for linkage was obtained to 7q11.22-q11.23. In WES data, a rare missense variant p.R183C in FKBP6 was identified that segregated with the disease in this family. The minor allele frequency was higher in an independent cohort of MS patients than in healthy controls (1.27% vs 0.95%), but not significant (odds ratio (OR) = 1.33 (95% confidence interval (CI): 0.8-2.4), p = 0.31).

conclusionThe rare missense variant in FKBP6 was identified in a large Dutch MS family segregating with the disease. This association to MS was not found in an independent MS cohort. Overall, genome-wide studies in larger cohorts are needed to adequately investigate the role of rare variants in MS risk.

Indexed as

AdultAgedExome SequencingFemaleGenetic LinkageHumansMaleMiddle AgedMultiple SclerosisMutation, MissenseNetherlandsPedigreeTacrolimus Binding ProteinsFKBP6 protein, humanTacrolimus Binding Proteinsfamilial aggregationlinkage analysisMultiple sclerosisrare variantswhole exome sequencing

Identifiers

PMID29873607
PMCPMC6545620
OpenAlexW2806147188

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.