Evidence map›Paper›PMID 29872726›Full record

ArticleNPJ precision oncology2018

Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma.

My Linh Thibodeau, Melika Bonakdar, Eric Zhao, Karen L Mungall, Caralyn Reisle, Wei Zhang, Morgan H Bye, Nina Thiessen, Dustin Bleile, Andrew J Mungall and 11 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in NPJ precision oncology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

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  9. Base excision repair deficiency signatures implicate germline and somaticCold Spring Harbor molecular case studies · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 1 country.

My Linh Thibodeau1Department of Medical Genetics, University of British Columbia, C201-4500 Oak Street, Vancouver, BC V6H 3N1 Canada.ORCID 0000-0002-2600-1197
Melika Bonakdar2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Eric Zhao2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Karen L Mungall2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Caralyn Reisle2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Wei Zhang2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Morgan H Bye2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Nina Thiessen2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Dustin Bleile2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Andrew J Mungall2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.ORCID 0000-0002-0905-2742
Yussanne P Ma2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Martin R Jones2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Daniel J Renouf3Department of Medical Oncology, British Columbia Cancer Agency, 600 West 10th Avenue, Vancouver, BC V5Z 4E6 Canada.
Howard J Lim3Department of Medical Oncology, British Columbia Cancer Agency, 600 West 10th Avenue, Vancouver, BC V5Z 4E6 Canada.
Stephen Yip4Department of Pathology & Laboratory Medicine, Vancouver General Hospital, 910 West 10th Avenue, Vancouver, BC V5Z 1M9 Canada.
Tony Ng4Department of Pathology & Laboratory Medicine, Vancouver General Hospital, 910 West 10th Avenue, Vancouver, BC V5Z 1M9 Canada.
Cheryl Ho3Department of Medical Oncology, British Columbia Cancer Agency, 600 West 10th Avenue, Vancouver, BC V5Z 4E6 Canada.
Janessa Laskin2Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, 100-570 West 7th Avenue, Vancouver, BC V5Z 4S6 Canada.
Marco A Marra1Department of Medical Genetics, University of British Columbia, C201-4500 Oak Street, Vancouver, BC V6H 3N1 Canada.
Kasmintan A Schrader5Hereditary Cancer Program, Department of Medical Genetics, British Columbia Cancer Agency, 614-750 West Broadway, Vancouver, BC V5Z 1H5 Canada.
Steven J M Jones1Department of Medical Genetics, University of British Columbia, C201-4500 Oak Street, Vancouver, BC V6H 3N1 Canada.
Canada's Michael Smith Genome Sciences Centre · CABC Cancer Agency · CAUniversity of British Columbia · CAVancouver General Hospital · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eccrine porocarcinomas (EPs) are rare malignant tumours of the intraepidermic sweat gland duct and most often arise from benign eccrine poromas. Some recurrent somatic genomic events have been identified in these malignancies, but very little is known about the complexity of their molecular pathophysiology. We describe the whole genome and whole transcriptome genomic profiling of a metastatic EP in a 66-year-old male patient with a previous history of localized porocarcinoma of the scalp. Whole genome and whole transcriptome genomic profiling was performed on the metastatic EP. Whole genome sequencing was performed on blood-derived DNA in order to allow a comparison between germline and somatic events. We found somatic copy losses of several tumour suppressor genes including

Identifiers

PMID29872726
PMCPMC5871832
OpenAlexW2806190885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.