Evidence map›Paper›PMID 29872713›Full record

ArticleNPJ precision oncology2017

Multi-focal sequencing of a diffuse intrinsic pontine glioma establishes PTEN loss as an early event.

Carl Koschmann, Zishaan Farooqui, Katayoon Kasaian, Xuhong Cao, Daniel Zamler, Stefanie Stallard, Sriram Venneti, Shawn Hervey-Jumper, Hugh Garton, Karin Muraszko and 8 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in NPJ precision oncology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Carl KoschmannDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Zishaan FarooquiDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Katayoon KasaianDepartment of Pathology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Xuhong CaoDepartment of Pathology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Daniel ZamlerDepartment of Neurosurgery, Michigan Medicine, Ann Arbor, MI 48109 USA.
Stefanie StallardDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Sriram VennetiDepartment of Pathology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Shawn Hervey-JumperDepartment of Neurosurgery, Michigan Medicine, Ann Arbor, MI 48109 USA.
Hugh GartonDepartment of Neurosurgery, Michigan Medicine, Ann Arbor, MI 48109 USA.
Karin MuraszkoDepartment of Neurosurgery, Michigan Medicine, Ann Arbor, MI 48109 USA.
Luigi FranchiDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Patricia L RobertsonDepartment of Pediatrics, Division of Pediatric Neurology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Marcia LeonardDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Valerie OpipariDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Maria G CastroDepartment of Neurosurgery, Michigan Medicine, Ann Arbor, MI 48109 USA.
Pedro R LowensteinDepartment of Neurosurgery, Michigan Medicine, Ann Arbor, MI 48109 USA.
Arul ChinnaiyanDepartment of Pathology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Rajen ModyDepartment of Pediatrics, Division of Pediatric Hematology/Oncology, Michigan Medicine, Ann Arbor, MI 48109 USA.
Michigan Medicine · USHoward Hughes Medical Institute · US

Funding

Sequencing, Analysis, and Interpretation of SequencingUM1HG006508 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PIENTA, KENNETH J., ROBERTS, SCOTT · 2013 to 2016
$7.8M
Oligodendrocyte-focused rAAV gene therapy strategies for Canavan disease and LeukodystrophiesR01NS076991 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Guangping Gao · 2012 to 2026
$5.7M
Immune-suppressive Myeloid Cells in the Glioma Microenvironment: Signaling Mechanisms and Novel Therapeutic StrategiesR37NS094804 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CASTRO, MARIA G · 2015 to 2021
$2.9M
Neuroimmunology of Malignant Brain Tumors: Innate MechanismsR01NS096756 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LOWENSTEIN, PEDRO R. · 2016 to 2020
$2.1M
Crosstalk between glioma cells & immune cells in the tumor microenvironment: TherR01NS074387 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CASTRO, MARIA G · 2011 to 2015
$1.9M
Brain immune responses:Cellular & Molecular MechanismsR01NS061107 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LOWENSTEIN, PEDRO R. · 2008 to 2012
$1.7M
Mechanisms of glioma growth and invasion novel therapeutic strategiesR01NS082311 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LOWENSTEIN, PEDRO R. · 2013 to 2017
$1.7M
Tuning Biomaterials-immune cell interactions for treatment of glioblastoma multiformeR01EB022563 · NIBIB · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOON, JAMES J. · 2016 to 2019
$1.7M
Targeting ATRX-Deficient Pediatric GBMK08NS099427 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KOSCHMANN, CARL J · 2017 to 2021
$811k
HDL-Loaded Nanoparticles for Glioma TherapeuticsR21NS091555 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CASTRO, MARIA G · 2015 to 2016
$427k
NHGRI NIH HHS UM1 HG006508NIBIB NIH HHS R01 EB022563NINDS NIH HHS K08 NS099427NINDS NIH HHS R01 NS061107NINDS NIH HHS R01 NS074387NINDS NIH HHS R01 NS076991NINDS NIH HHS R01 NS082311NINDS NIH HHS R01 NS096756NINDS NIH HHS R21 NS091555NINDS NIH HHS R37 NS094804
6 · The paper itself

Abstract

Improved molecular understanding is needed for rational treatment of diffuse intrinsic pontine gliomas (DIPG). Here, using multi-focal paired tumor and germline exome DNA and RNA sequencing, we uncovered phosphatase and tensin homolog (

Identifiers

PMID29872713
PMCPMC5871904
OpenAlexW2753067831

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.