Evidence map›Paper›PMID 29872546›Full record

ArticleNPJ Regenerative medicine2018

Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues.

Wuhong Pei, Lisha Xu, Sunny C Huang, Kade Pettie, Jennifer Idol, Alberto Rissone, Erin Jimenez, Jason W Sinclair, Claire Slevin, Gaurav K Varshney and 7 more

Open access · goldAbstract read
In one paragraph

Article in NPJ Regenerative medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Versatile CRISPR-Cas Tools for Gene Regulation in Zebrafish via an Enhanced Q Binary System.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  3. Snrnp25 is a candidate for the peri-implantation lethal phenotype of the Hba deletions.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  4. CRISPR-based functional genomics tools in vertebrate models.Experimental & molecular medicine · 2025
    Review
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  10. Review
  11. Article
  12. Metalloproteases in gonad formation and ovulation.General and comparative endocrinology · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. The application of genome editing technology in fish.Marine life science & technology · 2021
    Review
  18. How Zebrafish Can Drive the Future of Genetic-based Hearing and Balance Research.Journal of the Association for Research in Otolaryngology : JARO · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Wuhong Pei1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Lisha Xu1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Sunny C Huang1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Kade Pettie1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.ORCID 0000-0001-8445-3928
Jennifer Idol1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Alberto Rissone1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Erin Jimenez1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Jason W Sinclair1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Claire Slevin1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Gaurav K Varshney2Functional and Chemical Genomics Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104 USA.
MaryPat Jones1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Blake Carrington1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Kevin Bishop1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Haigen Huang3Department of Molecular, Cell, and Developmental Biology, University of California Los Angeles, Los Angeles, CA 90095 USA.
Raman Sood1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.
Shuo Lin3Department of Molecular, Cell, and Developmental Biology, University of California Los Angeles, Los Angeles, CA 90095 USA.
Shawn M Burgess1Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892 USA.ORCID 0000-0003-1147-0596
National Human Genome Research Institute · USUniversity of California, Los Angeles · USOklahoma Medical Research Foundation · US

Funding

Zebrafish targeted mutagenesis and functional genomicsZIAHG000183 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BURGESS, SHAWN M · 2009 to 2025
$16.7M
Hearing regeneration in zebrafishZIAHG200386 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BURGESS, SHAWN M · 2012 to 2025
$12.5M
NHGRI/DIR Zebrafish CoreZICHG200351 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI SOOD, RAMAN · 2015 to 2025
$12.1M
Intramural NIH HHS ZIA HG200386
6 · The paper itself

Abstract

Regenerative medicine holds great promise for both degenerative diseases and traumatic tissue injury which represent significant challenges to the health care system. Hearing loss, which affects hundreds of millions of people worldwide, is caused primarily by a permanent loss of the mechanosensory receptors of the inner ear known as hair cells. This failure to regenerate hair cells after loss is limited to mammals, while all other non-mammalian vertebrates tested were able to completely regenerate these mechanosensory receptors after injury. To understand the mechanism of hair cell regeneration and its association with regeneration of other tissues, we performed a guided mutagenesis screen using zebrafish lateral line hair cells as a screening platform to identify genes that are essential for hair cell regeneration, and further investigated how genes essential for hair cell regeneration were involved in the regeneration of other tissues. We created genetic mutations either by retroviral insertion or CRISPR/Cas9 approaches, and developed a high-throughput screening pipeline for analyzing hair cell development and regeneration. We screened 254 gene mutations and identified 7 genes specifically affecting hair cell regeneration. These hair cell regeneration genes fell into distinct and somewhat surprising functional categories. By examining the regeneration of caudal fin and liver, we found these hair cell regeneration genes often also affected other types of tissue regeneration. Therefore, our results demonstrate guided screening is an effective approach to discover regeneration candidates, and hair cell regeneration is associated with other tissue regeneration.

Identifiers

PMID29872546
PMCPMC5986822
OpenAlexW2805260086

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.