Evidence map›Paper›PMID 29872435›Full record

ArticleFrontiers in immunology2018

SHIP1 Deficiency in Inflammatory Bowel Disease Is Associated With Severe Crohn's Disease and Peripheral T Cell Reduction.

Sandra Fernandes, Neetu Srivastava, Raki Sudan, Frank A Middleton, Amandeep K Shergill, James C Ryan, William G Kerr

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. SHIP1 is required for T cell surveillance of occult malignancies.Cellular and molecular life sciences : CMLS · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Environmental and inflammatory factors influencing concurrent gut and lung inflammation.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Synthetic studies on the indane SHIP1 agonist AQX-1125.Organic & biomolecular chemistry · 2022
    Article
  14. Article
  15. Review
  16. SHIP-1, a target of miR-155, regulates endothelial cell responses in lung fibrosis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sandra FernandesDepartment of Microbiology and Immunology, Upstate Medical University, Syracuse, NY, United States.
Neetu SrivastavaDepartment of Microbiology and Immunology, Upstate Medical University, Syracuse, NY, United States.
Raki SudanDepartment of Microbiology and Immunology, Upstate Medical University, Syracuse, NY, United States.
Frank A MiddletonDepartment of Neuroscience and Physiology, Upstate Medical University, Syracuse, NY, United States.
Amandeep K ShergillDepartment of Medicine, University of California San Francisco, San Francisco, CA, United States.
James C RyanDepartment of Medicine, University of California San Francisco, San Francisco, CA, United States.
William G KerrDepartment of Microbiology and Immunology, Upstate Medical University, Syracuse, NY, United States.
SUNY Upstate Medical University · USSan Francisco VA Medical Center · USUniversity of California, San Francisco · US

Funding

Role of SHIP in NK Cell BiologyR01HL072523 · NHLBI · UPSTATE MEDICAL UNIVERSITY · PI KERR, WILLIAM GARROW · 2002 to 2014
$4.3M
Chemical Inhibition of SHIP1 To Facilitate Allogeneic Bone Marrow TransplantationR01HL107127 · NHLBI · UPSTATE MEDICAL UNIVERSITY · PI KERR, WILLIAM GARROW · 2011 to 2014
$1.6M
SHIP and Immunoregulatory Cell FunctionR01HL085580 · NHLBI · UPSTATE MEDICAL UNIVERSITY · PI KERR, WILLIAM GARROW · 2008 to 2011
$1.5M
NHLBI NIH HHS R01 HL072523NHLBI NIH HHS R01 HL085580NHLBI NIH HHS R01 HL107127
6 · The paper itself

Abstract

In our previous study, we observed a severe reduction in the Src homology 2-containing-inositol-phosphatase-1 (SHIP1) protein in a subpopulation of subjects from a small adult Crohn's Disease (CD) cohort. This pilot study had been undertaken since we had previously demonstrated that engineered deficiency of SHIP1 in mice results in a spontaneous and severe CD-like ileitis. Here, we extend our analysis of SHIP1 expression in peripheral blood mononuclear cells in a second much larger adult Inflammatory Bowel Disease (IBD) cohort, comprised of both CD and Ulcerative Colitis patients, to assess contribution of SHIP1 to the pathogenesis of human IBD. SHIP1 protein and mRNA levels were evaluated from blood samples obtained from IBD subjects seen at UCSF/SFVA, and compared to healthy control samples. Western blot analyses revealed that ~15% of the IBD subjects are severely SHIP1-deficient, with less than 10% of normal SHIP1 protein present in PBMC. Further analyses by flow cytometry and sequencing were performed on secondary samples obtained from the same subjects. Pan-hematolymphoid SHIP1 deficiency was a stable phenotype and was not due to coding changes in the

Indexed as

Lymphocyte CountAllelesAnimalsAutophagy-Related ProteinsBiomarkersComputational BiologyCrohn DiseaseDisease Models, AnimalDisease SusceptibilityExome SequencingExonsGene Expression ProfilingGene Expression RegulationHumansInflammatory Bowel DiseasesLeukocytes, MononuclearATG16L1 protein, humanAutophagy-Related ProteinsBiomarkersINPP5D protein, humanPhosphatidylinositol-3,4,5-Trisphosphate 5-PhosphatasesProteasome Endopeptidase ComplexATG16L1Crohn’s diseasefusion transcripthuman inflammatory bowel diseaseINPP5DSHIP1T cells

Identifiers

PMID29872435
PMCPMC5972310
OpenAlexW2800174771

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.