ArticlePlant physiology2018
The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology.
Article in Plant physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
31 citing papers in PubMed, 67 citations in OpenAlex.
- Phenome-to-genome insights for evaluating root system architecture in field studies of maize.The plant genome · 2025Article
- Seeing the unseen: A novel approach to extract latent plant root traits from digital images.Plant phenomics (Washington, D.C.) · 2025Article
- Article
- SpykProps: an imaging pipeline to quantify architecture in unilateral grass inflorescences.Plant methods · 2023Article
- Enhanced genome-wide association reveals the role of YABBY11-NGATHA-LIKE1 in leaf serration development of Populus.Plant physiology · 2023Article
- Topological data analysis expands the genotype to phenotype map for 3D maize root system architecture.Frontiers in plant science · 2023Article
- Artificial intelligence-driven systems engineering for next-generation plant-derived biopharmaceuticals.Frontiers in plant science · 2023Review
- Detecting Carbon Nanotube Orientation with Topological Analysis of Scanning Electron Micrographs.Nanomaterials (Basel, Switzerland) · 2022Article
- Model-based plant phenomics on morphological traits using morphometric descriptors.Breeding science · 2022Article
- Phenotyping Complex Plant Structures with a Large Format Industrial Scale High-Resolution X-Ray Tomography Instrument.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Quantitative dissection of color patterning in the foliar ornamental coleus.Plant physiology · 2021Article
- Geometric and topological approaches to shape variation inRoyal Society open science · 2021Article
- Resources for image-based high-throughput phenotyping in crops and data sharing challenges.Plant physiology · 2021Article
- Overcoming the Challenges to Enhancing Experimental Plant Biology With Computational Modeling.Frontiers in plant science · 2021Review
- Developmental plasticity ofPlant direct · 2021Article
- Noise robustness of persistent homology on greyscale images, across filtrations and signatures.PloS one · 2021Article
- Functional Principal Component Analysis: A Robust Method for Time-Series Phenotypic Data.Plant physiology · 2020Article
- The shape of things to come: Topological data analysis and biology, from molecules to organisms.Developmental dynamics : an official publication of the American Association of Anatomists · 2020Review
- Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberry.GigaScience · 2020Article
- Latent Space Phenotyping: Automatic Image-Based Phenotyping for Treatment Studies.Plant phenomics (Washington, D.C.) · 2020Article
Corrections and comments
- Commented on by
Authors and funding
6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Efforts to understand the genetic and environmental conditioning of plant morphology are hindered by the lack of flexible and effective tools for quantifying morphology. Here, we demonstrate that persistent-homology-based topological methods can improve measurement of variation in leaf shape, serrations, and root architecture. We apply these methods to 2D images of leaves and root systems in field-grown plants of a domesticated introgression line population of tomato (
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.