Evidence map›Paper›PMID 29866842›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Minimizing ATP depletion by oxygen scavengers for single-molecule fluorescence imaging in live cells.

Seung-Ryoung Jung, Yi Deng, Christopher Kushmerick, Charles L Asbury, Bertil Hille, Duk-Su Koh

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Cytotoxic and ROS generation activity of anthraquinones chelate complexes with metal ions.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
    Article
  4. Article
  5. β-arrestin-dependent PI(4,5)PProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Seung-Ryoung JungDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195; jsr007@uw.edu hille@uw.edu.
Yi DengDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195.
Christopher KushmerickDepartamento de Fisiologia e Biofísica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte MG - CEP 31270-901, Brazil.
Charles L AsburyDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195.
Bertil HilleDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195; jsr007@uw.edu hille@uw.edu.ORCID 0000-0002-7266-1671
Duk-Su KohDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195.
University of Washington · USUniversidade Federal de Minas Gerais · BR

Funding

The Yeast Centrosome - Structure Assembly & FunctionP01GM105537 · NIGMS · UNIVERSITY OF COLORADO · PI DAVIS, TRISHA N. · 2014 to 2018
$8.3M
Reconstitution and biophysical study of chromosome segregation machineryR35GM134842 · NIGMS · UNIVERSITY OF WASHINGTON · PI Charles L Asbury · 2020 to 2026
$4.7M
Supplement to Biophysical Study of Reconstituted Kinetochore-microtubule AttachmentsR01GM079373 · NIGMS · UNIVERSITY OF WASHINGTON · PI ASBURY, CHARLES · 2006 to 2019
$4.5M
Electric Studies of Excitation, Secretion & ContractionR01GM083913 · NIGMS · UNIVERSITY OF WASHINGTON · PI HILLE, BERTIL · 2008 to 2020
$4.3M
Molecular Properties of Ionic Permeability in NerveR37NS008174 · NINDS · UNIVERSITY OF WASHINGTON · PI HILLE, BERTIL · 2013 to 2019
$3.8M
Trafficking mechanisms for secretory vesicles in pancreatic duct epithelial cellsR01DK080840 · NIDDK · UNIVERSITY OF WASHINGTON · PI KOH, DUK-SU · 2011 to 2015
$1.6M
Multicolor TIRF microscope for studying mitotic spindle components at the singleS10RR026406 · NCRR · UNIVERSITY OF WASHINGTON · PI ASBURY, CHARLES · 2010 to 2010
$214k
NCRR NIH HHS S10 RR026406NIDDK NIH HHS R01 DK080840NIGMS NIH HHS P01 GM105537NIGMS NIH HHS R01 GM079373NIGMS NIH HHS R01 GM083913NIGMS NIH HHS R35 GM134842NINDS NIH HHS R37 NS008174
6 · The paper itself

Abstract

The stability of organic dyes against photobleaching is critical in single-molecule tracking and localization microscopy. Since oxygen accelerates photobleaching of most organic dyes, glucose oxidase is commonly used to slow dye photobleaching by depleting oxygen. As demonstrated here, pyranose-2-oxidase slows bleaching of Alexa647 dye by ∼20-fold. However, oxygen deprivation may pose severe problems for live cells by reducing mitochondrial oxidative phosphorylation and ATP production. We formulate a method to sustain intracellular ATP levels in the presence of oxygen scavengers. Supplementation with metabolic intermediates including glyceraldehyde, glutamine, and α-ketoisocaproate maintained the intracellular ATP level for at least 10 min by balancing between FADH

Indexed as

Adenosine TriphosphateCarbocyaninesCell LineFlavin-Adenine DinucleotideFluorescenceFluorescent DyesGlucose OxidaseGlutamineHEK293 CellsHumansKeto AcidsMicroscopy, FluorescenceMitochondriaNADOxygenPhosphatidylinositol 4,5-Diphosphate1,5-dihydro-FADAdenosine TriphosphateAlexa Fluor 647alpha-ketoisocaproic acidCarbocyaninesFlavin-Adenine DinucleotideFluorescent DyesGlucose OxidaseGlutamineKeto AcidsNADOxygenPhosphatidylinositol 4,5-DiphosphateReceptor, PAR-2ATPfluorescence microscopymetaboliteoxygen scavengerSingle-molecule live-cell imaging

Identifiers

PMID29866842
PMCPMC6016803
OpenAlexW2806409833

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.