Evidence map›Paper›PMID 29866608›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]

Petroleum contamination and bioaugmentation in bacterial rhizosphere communities from Avicennia schaueriana.

Simone Dealtry, Angela Michelato Ghizelini, Leda C S Mendonça-Hagler, Ricardo Moreira Chaloub, Fernanda Reinert, Tácio M P de Campos, Newton C M Gomes, Kornelia Smalla

Open access · hybridAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 12 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Simone DealtryPontifícia Universidade Católica do Rio de Janeiro, Departamento de Engenharia Civil, Rio de Janeiro, RJ, Brazil; Universidade Federal do Rio de Janeiro, Programa de Pós-Graduação em Biotecnologia Vegetal, Rio de Janeiro, RJ, Brazil. Electronic address: simonedgs@yahoo.com.br.
Angela Michelato GhizeliniUniversidade Federal do Rio de Janeiro, Programa de Pós-Graduação em Biotecnologia Vegetal, Rio de Janeiro, RJ, Brazil; Universidade Federal do Rio de Janeiro, Instituto de Microbiologia Paulo de Góes, Rio de Janeiro, RJ, Brazil.
Leda C S Mendonça-HaglerUniversidade Federal do Rio de Janeiro, Programa de Pós-Graduação em Biotecnologia Vegetal, Rio de Janeiro, RJ, Brazil; Universidade Federal do Rio de Janeiro, Instituto de Microbiologia Paulo de Góes, Rio de Janeiro, RJ, Brazil.
Ricardo Moreira ChaloubUniversidade Federal do Rio de Janeiro, Instituto de Química, Departamento de Bioquímica Rio de Janeiro, RJ, Brazil.
Fernanda ReinertUniversidade Federal do Rio de Janeiro, Programa de Pós-Graduação em Biotecnologia Vegetal, Rio de Janeiro, RJ, Brazil; Universidade Federal do Rio de Janeiro, Instituto de Biologia, Laboratório de Fisologia de Planta, Rio de Janeiro, RJ, Brazil.
Tácio M P de CamposPontifícia Universidade Católica do Rio de Janeiro, Departamento de Engenharia Civil, Rio de Janeiro, RJ, Brazil.
Newton C M GomesUniversidade de Aveiro, Departamento de Biologia, Centro de Estudos do Ambiente e do Mar (CESAM), Aveiro, Portugal.
Kornelia SmallaJulius Kühn-Institut (JKI) Bundesforschungsinstitut für Kulturpflanzen, Institut für Epidemiologie und Pathogendiagnostik, Braunschweig, Germany.
Universidade Federal do Rio de Janeiro · BRJulius Kühn-Institut · DEPontifical Catholic University of Rio de Janeiro · BRUniversity of Aveiro · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anthropogenic activity, such as accidental oil spills, are typical sources of urban mangrove pollution that may affect mangrove bacterial communities as well as their mobile genetic elements. To evaluate remediation strategies, we followed over the time the effects of a petroleum hydrocarbon degrading consortium inoculated on mangrove tree Avicennia schaueriana against artificial petroleum contamination in a phytoremediation greenhouse experiment. Interestingly, despite plant protection due to the inoculation, denaturing gradient gel electrophoresis of the bacterial 16S rRNA gene fragments amplified from the total community DNA indicated that the different treatments did not significantly affect the bacterial community composition. However, while the bacterial community was rather stable, pronounced shifts were observed in the abundance of bacteria carrying plasmids. A PCR-Southern blot hybridization analysis indicated an increase in the abundance of IncP-9 catabolic plasmids. Denaturing gradient gel electrophoresis of naphthalene dioxygenase (ndo) genes amplified from cDNA (RNA) indicated the dominance of a specific ndo gene in the inoculated petroleum amendment treatment. The petroleum hydrocarbon degrading consortium characterization indicated the prevalence of bacteria assigned to Pseudomonas spp., Comamonas spp. and Ochrobactrum spp. IncP-9 plasmids were detected for the first time in Comamonas sp. and Ochrobactrum spp., which is a novelty of this study.

Indexed as

AvicenniaBacteriaBiodegradation, EnvironmentalDNA, BacterialHydrocarbonsPetroleumPetroleum PollutionPlasmidsRhizosphereRNA, Ribosomal, 16SSoil PollutantsDNA, BacterialHydrocarbonsPetroleumRNA, Ribosomal, 16SSoil PollutantsIncP-9 plasmidsMangrovendo genesPhytoremediation

Identifiers

PMID29866608
PMCPMC6175736
OpenAlexW2808350561

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.