Evidence map›Paper›PMID 29866038›Full record

ArticleBMC plant biology2018

Tomato (Solanum lycopersicum) SlIPT4, encoding an isopentenyltransferase, is involved in leaf senescence and lycopene biosynthesis during fruit ripening.

Yong Zhang, Zhengguo Li, Yun Tu, Wenjing Cheng, Yingwu Yang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yong ZhangBioengineering College, Chongqing University, Chongqing, 400044, China.
Zhengguo LiSchool of Life Sciences, Chongqing University, Chongqing, 400044, China.
Yun TuBioengineering College, Chongqing University, Chongqing, 400044, China.
Wenjing ChengBioengineering College, Chongqing University, Chongqing, 400044, China.
Yingwu YangBioengineering College, Chongqing University, Chongqing, 400044, China. yangyinwu@cqu.edu.cn.ORCID http://orcid.org/0000-0001-7040-5853
Chongqing University · CN

Funding

Committee of Science and Technology of Chongqing, China cstc2017jcyjAX0455Fundamental Research Funds for the Central Universities 106112013CDJZR290035National Natural Science Foundation of China 31372080
6 · The paper itself

Abstract

backgroundLycopene is an important carotenoid pigment in red fruits and vegetables, especially in tomato. Although lycopene biosynthesis and catabolism have been found to be regulated by multiple factors including phytohormones, little is known about their regulatory mechanism. Cytokinins are crucial to various aspects of plant growth. Isopentenyltransferases (IPTs) catalyze the initial rate-limiting step of cytokinins biosynthesis, however, their roles in fruit ripening remain unclear.

resultsHere, the functions of SlIPT4, encoding an isopentenyltransferase, were characterized via RNAi-mediated gene silencing in tomato. As we expected, silencing of SlIPT4 expression resulted in accelerated leaf senescence. However, down-expression of SlIPT4 generated never-red orange fruits, corresponding with a dramatic reduction of lycopene. Among lycopene biosynthesis-related genes, the fact of remarkable decrease of ZISO transcript and upregulation of other genes, revealed that SlIPT4 regulates positively lycopene biosynthesis via directly affecting ZISO expression, and also supported the existence of regulatory loops in lycopene biosynthesis pathway. Meanwhile, the accumulation of abscisic acid (ABA) was reduced and the transcripts PSY1 were increased in SlIPT4-RNAi fruits, supporting the feedback regulation between ABA and lycopene biosynthesis.

conclusionThe study revealed the crucial roles of SlIPT4 in leaf senescence and the regulatory network of lycopene biosynthesis in tomato, providing a new light on the lycopene biosynthesis and fruit ripening.

Indexed as

Abscisic AcidAlkyl and Aryl TransferasesCytokininsFruitGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGene Regulatory NetworksLycopenePlant Growth RegulatorsPlant LeavesPlant ProteinsRNA InterferenceSolanum lycopersicumAbscisic Acidadenylate isopentenyltransferaseAlkyl and Aryl TransferasesCytokininsLycopenePlant Growth RegulatorsPlant ProteinsCarotenoidsCytokininsFruit ripeningLeaf senescenceLycopeneSlIPT4Tomato

Identifiers

PMID29866038
PMCPMC5987576
OpenAlexW2806089857

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.