Evidence map›Paper›PMID 29864154›Full record

ArticlePloS one2018

DMSO increases efficiency of genome editing at two non-coding loci.

George Stratigopoulos, Maria Caterina De Rosa, Charles A LeDuc, Rudolph L Leibel, Claudia A Doege

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Gene Editing of Primary Rhesus Macaque B Cells.Journal of visualized experiments : JoVE · 2023
    Article
  5. ACtivE: Assembly and CRISPR-TargetedACS synthetic biology · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

George StratigopoulosDepartment of Pediatrics, Columbia University, New York, NY, United States of America.ORCID 0000-0003-4752-9123
Maria Caterina De RosaDepartment of Pediatrics, Columbia University, New York, NY, United States of America.
Charles A LeDucDepartment of Pediatrics, Columbia University, New York, NY, United States of America.
Rudolph L LeibelDepartment of Pediatrics, Columbia University, New York, NY, United States of America.
Claudia A DoegeNaomi Berrie Diabetes Center, Columbia University Medical Center, New York, NY, United States of America.
Columbia University Irving Medical Center · US

Funding

RESEARCH TRAININGP30DK026687 · NIDDK · ST. LUKE'S-ROOSEVELT INST FOR HLTH SCIS · PI Anthony W Ferrante, DYMPNA GALLAGHER · 1986 to 2026
$33.0M
The molecular genetic analysis of human obesityR01DK052431 · NIDDK · ROCKEFELLER UNIVERSITY · PI CHUNG, WENDY K, LEIBEL, RUDOLPH L · 1996 to 2020
$11.6M
Study of coding variants in human obesity and their functional characterization using human iPSC-derived cellular modelsR01DK110113 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI LOOS, RUTH JF · 2016 to 2020
$2.8M
NIDDK NIH HHS P30 DK026687NIDDK NIH HHS R01 DK052431NIDDK NIH HHS R01 DK110113
6 · The paper itself

Abstract

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated protein-9 (Cas9) has become the tool of choice for genome editing. Despite the fact that it has evolved as a highly efficient means to edit/replace coding sequence, CRISPR/Cas9 efficiency for "clean" editing of non-coding DNA remains low. We set out to introduce a single base-pair substitution in two intronic SNPs at the FTO locus without altering nearby non-coding sequence. Substitution efficiency increased up to 10-fold by treatment of human embryonic stem cells (ESC) with non-toxic levels of DMSO (1%) before CRISPR/Cas9 delivery. Treatment with DMSO did not result in CRISPR/Cas9 off-target effects or compromise the chromosomal stability of the ESC. Twenty-four hour treatment of human ESC with DMSO before CRISPR/Cas9 delivery may prove a simple means to increase editing efficiency of non-coding DNA without incorporation of undesirable mutations.

Indexed as

Alpha-Ketoglutarate-Dependent Dioxygenase FTOCell LineCRISPR-Cas SystemsDimethyl SulfoxideGene EditingGenetic LociHuman Embryonic Stem CellsHumansIntronsPolymorphism, Single NucleotideAlpha-Ketoglutarate-Dependent Dioxygenase FTODimethyl SulfoxideFTO protein, human

Identifiers

PMID29864154
PMCPMC5986138
OpenAlexW2806113530

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.