Evidence map›Paper›PMID 29863497›Full record

ArticleThe Journal of clinical investigation2018

ATR inhibition controls aggressive prostate tumors deficient in Y-linked histone demethylase KDM5D.

Kazumasa Komura, Yuki Yoshikawa, Teppei Shimamura, Goutam Chakraborty, Travis A Gerke, Kunihiko Hinohara, Kalyani Chadalavada, Seong Ho Jeong, Joshua Armenia, Shin-Yi Du and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 75 citations in OpenAlex.

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  11. KDM5D histone demethylase mediates p38α inactivation via its enzymatic activity to inhibit cancer progression.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Review
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  14. Y Chromosome Loss and Implications for Oncology.Molecular cancer research : MCR · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 2 countries.

Kazumasa KomuraDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Yuki YoshikawaDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Teppei ShimamuraDivision of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Goutam ChakrabortyDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Travis A GerkeDepartment of Cancer Epidemiology, Moffitt Cancer Center, Tampa, Florida, USA.
Kunihiko HinoharaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Kalyani ChadalavadaMolecular Cytogenetics Core, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Seong Ho JeongDepartment of Medicine, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Joshua ArmeniaHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Shin-Yi DuDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Ying Z MazzuDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Kohei TaniguchiTranslational Research Program, Osaka Medical College, Osaka, Japan.
Naokazu IbukiDepartment of Urology and.
Clifford A MeyerDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Gouri J NanjangudMolecular Cytogenetics Core, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Teruo InamotoDepartment of Urology and.
Gwo-Shu Mary LeeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Lorelei A MucciDepartment of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Haruhito AzumaDepartment of Urology and.
Christopher J SweeneyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Philip W KantoffDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Memorial Sloan Kettering Cancer Center · USDana-Farber Cancer Institute · USHarvard University · USMoffitt Cancer Center · USNagoya University · JPOsaka Medical and Pharmaceutical University · JPPenn State Milton S. Hershey Medical Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Epigenetic modifications control cancer development and clonal evolution in various cancer types. Here, we show that loss of the male-specific histone demethylase lysine-specific demethylase 5D (KDM5D) encoded on the Y chromosome epigenetically modifies histone methylation marks and alters gene expression, resulting in aggressive prostate cancer. Fluorescent in situ hybridization demonstrated that segmental or total deletion of the Y chromosome in prostate cancer cells is one of the causes of decreased KDM5D mRNA expression. The result of ChIP-sequencing analysis revealed that KDM5D preferably binds to promoter regions with coenrichment of the motifs of crucial transcription factors that regulate the cell cycle. Loss of KDM5D expression with dysregulated H3K4me3 transcriptional marks was associated with acceleration of the cell cycle and mitotic entry, leading to increased DNA-replication stress. Analysis of multiple clinical data sets reproducibly showed that loss of expression of KDM5D confers a poorer prognosis. Notably, we also found stress-induced DNA damage on the serine/threonine protein kinase ATR with loss of KDM5D. In KDM5D-deficient cells, blocking ATR activity with an ATR inhibitor enhanced DNA damage, which led to subsequent apoptosis. These data start to elucidate the biological characteristics resulting from loss of KDM5D and also provide clues for a potential novel therapeutic approach for this subset of aggressive prostate cancer.

Indexed as

AnimalsAtaxia Telangiectasia Mutated ProteinsCell Line, TumorChromosomes, Human, YDNA DamageEpigenesis, GeneticGene DosageGene Knockdown TechniquesHistone CodeHistone DemethylasesHumansIn Situ Hybridization, FluorescenceMaleMiceMice, Inbred NODMice, SCIDAtaxia Telangiectasia Mutated ProteinsATR protein, humanHistone DemethylasesKDM5D protein, humanMinor Histocompatibility AntigensProtein Kinase InhibitorsDrug therapyEpigeneticsGeneticsOncologyProstate cancer

Identifiers

PMID29863497
PMCPMC6025984
OpenAlexW2806968137

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.