Evidence map›Paper›PMID 29860405›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2018

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example.

Samuel Aronson, Lawrence Babb, Darren Ames, Richard A Gibbs, Eric Venner, John J Connelly, Keith Marsolo, Chunhua Weng, Marc S Williams, Andrea L Hartzler and 15 more

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Neptune: an environment for the delivery of genomic medicine.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Calling on Primary Care to Prevent BRCA-Related Cancers.Journal of general internal medicine · 2020
    Article
  15. Integrating pharmacogenomics into the electronic health record by implementing genomic indicators.Journal of the American Medical Informatics Association : JAMIA · 2020
    Article
  16. ARBoR: an identity and security solution for clinical reporting.Journal of the American Medical Informatics Association : JAMIA · 2019
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Samuel AronsonResearch Information Science and Computing, Partners HealthCare, Boston, Massachusetts, USA.
Lawrence BabbMitogen-GeneInsight, Sunquest Information Systems, Boston, Massachusetts, USA.
Darren AmesDNAnexus, Inc., Mountain View, California, USA.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Eric VennerHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
John J ConnellyCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.
Keith MarsoloDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Chunhua WengDepartment of Biomedical Informatics, Columbia University, New York, New York, USA.
Marc S WilliamsGenomic Medicine Institute, Geisinger, Danville, Pennsylvania, USA.
Andrea L HartzlerKaiser Permanente Washington Health Research Institute, Seattle, Washington, USA.
Wayne H LiangInformatics Institute, University of Alabama at Birmingham, Birmingham, Alabama, USA.
James D RalstonKaiser Permanente Washington Health Research Institute, Seattle, Washington, USA.
Emily Beth DevineDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, Washington, USA.
Shawn MurphyResearch Information Science and Computing, Partners HealthCare, Boston, Massachusetts, USA.
Christopher G ChuteDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Pedro J CaraballoDepartment of Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Iftikhar J KulloDepartment of Cardiovascular Diseases, Mayo Clinic, Rochester, Minnesota, USA.
Robert R FreimuthDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA.
Luke V RasmussenDepartment of Preventive Medicine, Division of Health and Biomedical Informatics, Northwestern University, Chicago, Illinois, USA.
Firas H WehbeDepartment of Preventive Medicine, Division of Health and Biomedical Informatics, Northwestern University, Chicago, Illinois, USA.
Josh F PetersonDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Jamie R RobinsonDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Ken WileyNational Human Genome Research Institute, Bethesda, Maryland, USA.
Casey Overby TaylorGenomic Medicine Institute, Geisinger, Danville, Pennsylvania, USA.
eMERGE Network EHRI Working Group

Funding

Vanderbilt Biomedical Informatics Training ProgramT15LM007450 · NLM · VANDERBILT UNIVERSITY · PI Jessica S. Ancker, Bradley A. Malin · 2002 to 2026
$19.7M
University of Washington Biomedical Informatics and Data Science Research Training ProgramT15LM007442 · NLM · UNIVERSITY OF WASHINGTON · PI JOHN H. GENNARI, Andrea L. Hartzler · 2002 to 2026
$19.6M
Genomic Basis of Susceptibility to COVID-19 Infection and its ComplicationsU01HG006379 · NHGRI · MAYO CLINIC ROCHESTER · PI Richard R. Sharp · 2011 to 2026
$16.5M
Finding Genomic Profiles of COVID-19 Phenotypes from the EHRU01HG008685 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIZABETH W KARLSON, Matthew S Lebo · 2015 to 2026
$13.6M
Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
DNA Sequencing Support for the eMERGE NetworkU01HG008664 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2015 to 2019
$10.9M
Global Alliance for Genomic Health (GA4GH)U01HG008676 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI LENNON, NIALL JOHN, REHM, HEIDI L · 2015 to 2019
$8.6M
The Electronic Medical Records and Genomics (eMERGE) Network Phase III Coordinating Center (U01)U01HG008701 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PETERSON, JOSEPH F. · 2015 to 2019
$7.1M
VGER, the Vanderbilt Genome-Electronic Records ProjectU01HG008672 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENNY, JOSHUA C., RODEN, DAN M · 2015 to 2019
$5.1M
The Future of Genomics Medicine in Patient Care: Contributions from CHOPU01HG008684 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2015 to 2019
$5.0M
OMOP information model for eMERGE phenotypingU01HG008679 · NHGRI · GEISINGER CLINIC · PI WILLIAMS, MARC S. · 2015 to 2019
$4.4M
NHGRI NIH HHS U01 HG006379NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008664NHGRI NIH HHS U01 HG008666NHGRI NIH HHS U01 HG008672NHGRI NIH HHS U01 HG008673NHGRI NIH HHS U01 HG008676NHGRI NIH HHS U01 HG008679NHGRI NIH HHS U01 HG008680NHGRI NIH HHS U01 HG008684NHGRI NIH HHS U01 HG008685NHGRI NIH HHS U01 HG008701NLM NIH HHS T15 LM007442NLM NIH HHS T15 LM007450
6 · The paper itself

Abstract

The eMERGE Network is establishing methods for electronic transmittal of patient genetic test results from laboratories to healthcare providers across organizational boundaries. We surveyed the capabilities and needs of different network participants, established a common transfer format, and implemented transfer mechanisms based on this format. The interfaces we created are examples of the connectivity that must be instantiated before electronic genetic and genomic clinical decision support can be effectively built at the point of care. This work serves as a case example for both standards bodies and other organizations working to build the infrastructure required to provide better electronic clinical decision support for clinicians.

Indexed as

Electronic Health RecordsGenetic TestingComputer Communication NetworksGenome, HumanGenomicsHumansInformation DisseminationSequence Analysis, DNAUnited States

Identifiers

PMID29860405
PMCPMC6188517

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.