Evidence map›Paper›PMID 29860032›Full record

ArticleGenomics2019

The p53-signaling pathway and colorectal cancer: Interactions between downstream p53 target genes and miRNAs.

Martha L Slattery, Lila E Mullany, Roger K Wolff, Lori C Sakoda, Wade S Samowitz, Jennifer S Herrick

Open access · hybridAbstract read
In one paragraph

Article in Genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
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  10. Exploring the components and mechanism ofFrontiers in oncology · 2023
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  19. The p53 Pathway Related Genes Predict the Prognosis of Colon Cancer.International journal of general medicine · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Martha L SlatteryDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, UT, United States. Electronic address: marty.slattery@hsc.utah.edu.
Lila E MullanyDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, UT, United States.
Roger K WolffDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, UT, United States.
Lori C SakodaDivision of Research, Kaiser Permanente Northern California, Oakland, CA, United States.
Wade S SamowitzDepartment of Pathology, University of Utah, Salt Lake City, UT, United States.
Jennifer S HerrickDepartment of Medicine, University of Utah, 383 Colorow, Salt Lake City, UT, United States.
University of Utah · USKaiser Permanente · US

Funding

miRNA and colorectal cancer: associations with tumor phenotype and survivalR01CA163683 · NCI · UNIVERSITY OF UTAH · PI SLATTERY, MARTHA L · 2012 to 2017
$6.5M
NCI NIH HHS R01 CA163683
6 · The paper itself

Abstract

introductionWe examined expression of genes in the p53-signaling pathway. We determine if genes that have significantly different expression in carcinoma tissue compared to normal mucosa also have significantly differentially expressed miRNAs. We utilize a sample of 217 CRC cases.

methodsWe focused on fold change (FC) > 1.50 or <0.67 for genes and miRNAs, that were statistically significant after adjustment for multiple comparisons. We evaluated the linear association between the differential expression of miRNA and mRNA. miRNA:mRNA seed-region matches also were determined.

resultsEleven dysregulated genes were associated with 37 dysregulated miRNAs; all were down-stream from the TP53 gene. MiR-150-5p (HR = 0.82) and miR-196b-5p (HR 0.73) significantly reduced the likelihood of dying from CRC when miRNA expression increased in rectal tumors.

conclusionsOur data suggest that activation of p53 from cellular stress, could target downstream genes that in turn could influence cell cycle arrest, apoptosis, and angiogenesis through mRNA:miRNA interactions.

Indexed as

Gene Expression Regulation, NeoplasticAgedApoptosisCarcinomaCell CycleColorectal NeoplasmsFemaleGene Regulatory NetworksHumansIntestinal MucosaMaleMicroRNAsMiddle AgedSignal TransductionTumor Suppressor Protein p53MicroRNAsTP53 protein, humanTumor Suppressor Protein p53Colorectal CancermiRNAmRNATP53

Identifiers

PMID29860032
PMCPMC6274615
OpenAlexW2805961026

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.