Evidence map›Paper›PMID 29859070›Full record

ArticleBMC oral health2018

Novel caries loci in children and adults implicated by genome-wide analysis of families.

Manika Govil, Nandita Mukhopadhyay, Daniel E Weeks, Eleanor Feingold, John R Shaffer, Steven M Levy, Alexandre R Vieira, Rebecca L Slayton, Daniel W McNeil, Robert J Weyant and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC oral health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Other Types of Glycosylation.Advances in experimental medicine and biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Manika GovilCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA. manika.govil@gmail.com.ORCID 0000-0002-5126-2460
Nandita MukhopadhyayCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA.
Daniel E WeeksDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.
Eleanor FeingoldCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA.
John R ShafferCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA.
Steven M LevyDepartment of Preventive and Community Dentistry, University of Iowa College of Dentistry, Iowa City, IA, USA.
Alexandre R VieiraCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA.
Rebecca L SlaytonDepartment of Pediatric Dentistry, School of Dentistry, University of Washington, Seattle, WA, USA.
Daniel W McNeilDental Practice and Rural Health, West Virginia University School of Dentistry, Morgantown, WV, USA.
Robert J WeyantDepartment of Dental Public Health and Information Management, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Richard J CroutDepartment of Periodontics, West Virginia University School of Dentistry, Morgantown, WV, USA.
Mary L MarazitaCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA.
University of Pittsburgh · USWest Virginia University · USUniversity of Iowa · USUniversity of Washington · US

Funding

Psychosocial Influences on Rural Children's Oral HealthR01DE014899 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FOXMAN, BETSY, MARAZITA, MARY L. · 2002 to 2020
$39.9M
Fluoride & Other Factors in Childhood and Adolescent Bone DevelopmentR01DE012101 · NIDCR · UNIVERSITY OF IOWA · PI LEVY, STEVEN M. · 1998 to 2013
$11.9M
THERMAL ASSEMBLY OF MINERAL/COLLAGEN BIOMATERIALSP60DE013076 · NIDCR · UNIVERSITY OF IOWA · PI KOHOUT, FRANK J. · 1999 to 2003
$8.4M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
LONGITUDINAL STUDY OF FLUORIDE EXPOSURES &FLUORIDER01DE009551 · NIDCR · UNIVERSITY OF IOWA · PI LEVY, STEVEN M. · 1991 to 2008
$4.7M
Dental Caries: Whole Genome Association and Gene x Environment StudiesU01DE018903 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L. · 2007 to 2010
$1.2M
Statistical Genetic Analysis of Complex Craniofacial and Dental Genetic DisordersR00DE018085 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GOVIL, MANIKA · 2011 to 2013
$709k
NHGRI NIH HHS HHSN268200782096CNHGRI NIH HHS U01 HG004446NIDCR NIH HHS P60 DE013076NIDCR NIH HHS R00 DE018085NIDCR NIH HHS R01 DE009551NIDCR NIH HHS R01 DE012101NIDCR NIH HHS R01 DE014899NIDCR NIH HHS U01 DE018903
6 · The paper itself

Abstract

backgroundDental caries is a common chronic disease among children and adults alike, posing a substantial health burden. Caries is affected by multiple genetic and environmental factors, and prior studies have found that a substantial proportion of caries susceptibility is genetically inherited.

methodsTo identify such genetic factors, we conducted a genome-wide linkage scan in 464 extended families with 2616 individuals from Iowa, Pennsylvania and West Virginia for three dental caries phenotypes: (1) PRIM: dichotomized as zero versus one or more affected primary teeth, (2) QTOT1: age-adjusted quantitative caries measure for both primary and permanent dentitions including pre-cavitated lesions, and (3) QTOT2: age-adjusted quantitative caries excluding pre-cavitated lesions. Genotyping was conducted for approximately 600,000 SNPs on an Illumina platform, pruned to 127,511 uncorrelated SNPs for the analyses reported here.

resultsMultipoint non-parametric linkage analyses generated peak LOD scores exceeding 2.0 for eight genomic regions, but no LOD scores above 3.0 were observed. The maximum LOD score for each of the three traits was 2.90 at 1q25.3 for PRIM, 2.38 at 6q25.3 for QTOT1, and 2.76 at 5q23.3 for QTOT2. Some overlap in linkage regions was observed among the phenotypes. Genes with a potential role in dental caries in the eight chromosomal regions include CACNA1E, LAMC2, ALMS1, STAMBP, GXYLT2, SLC12A2, MEGF10, TMEM181, ARID1B, and, as well as genes in several immune gene families. Our results are also concordant with previous findings from association analyses on chromosomes 11 and 19.

conclusionsThese multipoint linkage results provide evidence in favor of novel chromosomal regions, while also supporting earlier association findings for these data. Understanding the genetic etiology of dental caries will allow designing personalized treatment plans based on an individual's genetic risk of disease.

Indexed as

AdolescentAdultChildChild, PreschoolChromosomes, HumanDental CariesDental Caries SusceptibilityGenome-Wide Association StudyHumansIowaLod ScoreMiddle AgedPennsylvaniaPhenotypePolymorphism, Single NucleotideWest VirginiaDental geneticsDental public healthGenome-wide linkage studyNon-parametric linkagePermanent dentition cariesPrimary dentition caries

Identifiers

PMID29859070
PMCPMC5984765
OpenAlexW2805772283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.