Evidence map›Paper›PMID 29858830›Full record

ArticleJournal of microbiology (Seoul, Korea)2018

Diversity of A mating type in Lentinula edodes and mating type preference in the cultivated strains.

Byeongsuk Ha, Sinil Kim, Minseek Kim, Yoon Jung Moon, Yelin Song, Jae-San Ryu, Hojin Ryu, Hyeon-Su Ro

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Effect of a Mating Type Gene Editing inJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. Article
  5. Structural Analysis of theJournal of fungi (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Byeongsuk HaDivision of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Sinil KimDivision of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Minseek KimDivision of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Yoon Jung MoonDivision of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Yelin SongDivision of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Jae-San RyuDepartment of Mushroom, Korea National College of Agriculture and Fisheries, Jeonju, 54874, Republic of Korea.
Hojin RyuDepartment of Biology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hyeon-Su RoDivision of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju, 52828, Republic of Korea. rohyeon@gnu.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diversity of A mating type in Lentinula edodes has been assessed by analysis of A mating loci in 127 strains collected from East Asia. It was discovered that hypervariable sequence region with an approximate length of 1 kb in the A mating locus, spanning 5' region of HD2-intergenic region-5' region of HD1, could represent individual A mating type as evidenced by comprehensive mating analysis. The sequence analysis revealed 27 A mating type alleles from 96 cultivated strains and 48 alleles from 31 wild strains. Twelve of them commonly appeared, leaving 63 unique A mating type alleles. It was also revealed that only A few A mating type alleles such as A1, A4, A5, and A7 were prevalent in the cultivated strains, accounting for 62.5% of all A mating types. This implies preferred selection of certain A mating types in the process of strain development and suggests potential role of A mating genes in the expression of genes governing mushroom quality. Dominant expression of an A mating gene HD1 was observed from A1 mating locus, the most prevalent A allele, in A1-containing dikaryons. However, connections between HD1 expression and A1 preference in the cultivated strains remain to be verified. The A mating type was highly diverse in the wild strains. Thirty-six unique A alleles were discovered from relatively small and confined area of mountainous region in Korean peninsula. The number will further increase because no A allele has been recurrently observed in the wild strains and thus newly discovered strain will have good chances to contain new A allele. The high diversity in small area also suggests that the A mating locus has evolved rapidly and thus its diversity will further increase.

Indexed as

AllelesBase SequenceDNA, FungalGene Expression Regulation, FungalGenes, FungalGenes, Mating Type, FungalGenetic LociGenome, FungalQuantitative Trait LociRepublic of KoreaSequence Analysis, DNAShiitake MushroomsSpores, FungalDNA, Fungaldiversitylentinulamatingnucleuspreference

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.