Evidence map›Paper›PMID 29858578›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Pharmacogenetic testing in the Veterans Health Administration (VHA): policy recommendations from the VHA Clinical Pharmacogenetics Subcommittee.

Jason L Vassy, Annjanette Stone, John T Callaghan, Margaret Mendes, Laurence J Meyer, Victoria M Pratt, Ronald M Przygodzki, Maren T Scheuner, Jessica Wang-Rodriguez, Steven A Schichman and 1 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04331535 (Pragmatic Randomized Trial of Polygenic Risk Scoring for Common Diseases in Primary Care), which is not on this map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04331535 naunknown statusnot on this mapstarted 2020, after this paper: background citation

Pragmatic Randomized Trial of Polygenic Risk Scoring for Common Diseases in Primary Care

TypeinterventionalSponsorBoston VA Research Institute, Inc.Ran2020 to 2025Enrolled1,076ConditionsCoronary Artery Disease, Atrial Fibrillation, Type 2 Diabetes, Colorectal CancerArmsPolygenic risk score (PRS)
3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Patients dispensed medications with actionable pharmacogenomic biomarkers: rates and characteristics.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Response to Gammal et al.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  9. Considerations for pharmacogenomic testing in a health system.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  10. Review
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 9 institutions in 1 country.

Jason L VassySection of General Internal Medicine, VA Boston Healthcare System, Boston, Massachusetts, USA. jvassy@partners.org.
Annjanette StonePharmacogenomics Analysis Laboratory, Central Arkansas Veterans Healthcare System, Little Rock, Arkansas, USA.
John T CallaghanRichard L. Roudebush VA Medical Center, Indianapolis, Indiana, USA.
Margaret MendesVA San Diego Healthcare System, San Diego, California, USA.
Laurence J MeyerOffice of Specialty Care Services, Veterans Health Administration, Washington, DC, USA.
Victoria M PrattIndiana University School of Medicine, Indianapolis, Indiana, USA.
Ronald M PrzygodzkiOffice of Research & Development, US Department of Veterans Affairs, Washington, DC, USA.
Maren T ScheunerDivision of Medical Genetics, Department of Medicine, VA Greater Los Angeles Healthcare System, Los Angeles, California, USA.
Jessica Wang-RodriguezVA San Diego Healthcare System, San Diego, California, USA.
Steven A SchichmanPharmacogenomics Analysis Laboratory, Central Arkansas Veterans Healthcare System, Little Rock, Arkansas, USA.
VHA Clinical Pharmacogenetics Subcommittee
Central Arkansas Veterans Healthcare System · USBrigham and Women's Hospital · USIndiana University School of MedicineRichard L. Roudebush VA Medical Center · USUnited States Department of Veterans Affairs · USUniversity of California, Los Angeles · USUniversity of California San Diego · USVA San Diego Healthcare System · USVeterans Health Administration · US

Funding

Embedding Pharmacogenotyping in an Integrated Health System for the UnderservedU01HG007762 · NHGRI · INDIANA UNIVERSITY INDIANAPOLIS · PI DEXTER, PAUL, SKAAR, TODD C. · 2014 to 2018
$4.4M
Clinical safety and efficacy of pharmacogenetics in Veteran careIK2CX001262 · VA · VA BOSTON HEALTH CARE SYSTEM · PI VASSY, JASON L · 2016 to 2021
–
CSRD VA IK2 CX001262NHGRI NIH HHS U01 HG007762
6 · The paper itself

Abstract

purposeThe Veterans Health Administration (VHA) Clinical Pharmacogenetics Subcommittee is charged with making recommendations about whether specific pharmacogenetic tests should be used in healthcare at VHA facilities. We describe a process to inform VHA pharmacogenetic testing policy.

methodsAfter developing consensus definitions of clinical validity and utility, the Subcommittee identified salient drug-gene pairs with potential clinical application in VHA. Members met monthly to discuss each drug-gene pair, the evidence of clinical utility for the associated pharmacogenetic test, and any VHA-specific testing considerations. The Subcommittee classified each test as strongly recommended, recommended, or not routinely recommended before drug initiation.

resultsOf 30 drug-gene pair tests reviewed, the Subcommittee classified 4 (13%) as strongly recommended, including HLA-B*15:02 for carbamazepine-associated Stevens-Johnston syndrome and G6PD for rasburicase-associated hemolytic anemia; 12 (40%) as recommended, including CYP2D6 for codeine toxicity; and 14 (47%) as not routinely recommended, such as CYP2C19 for clopidogrel dosing.

conclusionOnly half of drug-gene pairs with high clinical validity received Subcommittee support for policy promoting their widespread use across VHA. The Subcommittee generally found insufficient evidence of clinical utility or available, effective alternative strategies for the remainders. Continual evidence review and rigorous outcomes research will help promote the translation of pharmacogenetic discovery to healthcare.

Indexed as

ClopidogrelCytochrome P-450 CYP2C19Cytochrome P-450 CYP2D6GenotypeGlucosephosphate DehydrogenaseHLA-B15 AntigenHumansPharmacogeneticsPharmacogenomic TestingStevens-Johnson SyndromeUnited StatesUnited States Department of Veterans AffairsVeteransVeterans HealthClopidogrelCYP2C19 protein, humanCytochrome P-450 CYP2C19Cytochrome P-450 CYP2D6Glucosephosphate DehydrogenaseHLA-B15 AntigenEvidence-based practiceGenetic testingPharmacogeneticsPolicymaking

Identifiers

PMID29858578
PMCPMC6274593
OpenAlexW2807093863

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.