Evidence map›Paper›PMID 29856850›Full record

ArticlePloS one2018

Elucidating the contribution of wild related species on autochthonous pear germplasm: A case study from Mount Etna.

Stefania Bennici, Giuseppina Las Casas, Gaetano Distefano, Mario Di Guardo, Alberto Continella, Filippo Ferlito, Alessandra Gentile, Stefano La Malfa

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Stefania BenniciDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.
Giuseppina Las CasasDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.
Gaetano DistefanoDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.ORCID 0000-0002-6080-6466
Mario Di GuardoDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.ORCID 0000-0003-3339-2007
Alberto ContinellaDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.ORCID 0000-0002-7734-9927
Filippo FerlitoConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria, Centro di Ricerca Olivicoltura, Frutticoltura e Agrumicoltura (CREA-OFA), Acireale, Italy.
Alessandra GentileDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.
Stefano La MalfaDipartimento di Agricoltura, Alimentazione e Ambiente, University of Catania, Catania, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pear (genus Pyrus) is one of the most ancient and widely cultivated tree fruit crops in temperate climates. The Mount Etna area claims a large number of pear varieties differentiated due to a long history of cultivation and environmental variability, making this area particularly suitable for genetic studies. Ninety-five pear individuals were genotyped using the simple sequence repeat (SSR) methodology interrogating both the nuclear (nDNA) and chloroplast DNA (cpDNA) to combine an investigation of maternal inheritance of chloroplast SSRs (cpSSRs) with the high informativity of nuclear SSRs (nSSRs). The germplasm was selected ad hoc to include wild genotypes, local varieties, and national and international cultivated varieties. The objectives of this study were as follows: (i) estimate the level of differentiation within local varieties; (ii) elucidate the phylogenetic relationships between the cultivated genotypes and wild accessions; and (iii) estimate the potential genetic flow and the relationship among the germplasms in our analysis. Eight nSSRs detected a total of 136 alleles with an average minor allelic frequency and observed heterozygosity of 0.29 and 0.65, respectively, whereas cpSSRs allowed identification of eight haplotypes (S4 Table). These results shed light on the genetic relatedness between Italian varieties and wild genotypes. Among the wild species, compared with P. amygdaliformis, few P. pyraster genotypes exhibited higher genetic similarity to local pear varieties. Our analysis revealed the presence of genetic stratification with a 'wild' subpopulation characterizing the genetic makeup of wild species and the international cultivated varieties exhibiting the predominance of the 'cultivated' subpopulation.

Indexed as

AllelesDNA, PlantGene FrequencyGenetic VariationGenotypeHaplotypesMicrosatellite RepeatsPhylogenyPrincipal Component AnalysisPyrusDNA, Plant

Identifiers

PMID29856850
PMCPMC5983503

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