Evidence map›Paper›PMID 29856771›Full record

ArticlePloS one2018

Transcriptome analysis of differentially expressed genes involved in selenium accumulation in tea plant (Camellia sinensis).

Dan Cao, Yanli Liu, Linlong Ma, Xiaofang Jin, Guiyi Guo, Rongrong Tan, Zheng Liu, Lin Zheng, Fei Ye, Wei Liu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 82 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Dan CaoFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.ORCID 0000-0002-4219-5593
Yanli LiuFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Linlong MaFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Xiaofang JinFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Guiyi GuoHenan Key Laboratory of Tea Comprehensive utilization in South Henan, Xinyang Agriculture and Forestry University, Xinyang, Henan, China.
Rongrong TanFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Zheng LiuFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Lin ZhengFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Fei YeFruit and Tea Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, China.
Wei LiuHenan Key Laboratory of Tea Comprehensive utilization in South Henan, Xinyang Agriculture and Forestry University, Xinyang, Henan, China.
Tea Research Institute · CNXinyang College of Agriculture and Forestry · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tea plant (Camellia sinensis) has strong enrichment ability for selenium (Se). Selenite is the main form of Se absorbed and utilized by tea plant. However, the mechanism of selenite absorption and accumulation in tea plant is still unknown. In this study, RNA sequencing (RNA-seq) was used to perform transcriptomic analysis on the molecular mechanism of selenite absorption and accumulation in tea plant. 397.98 million high-quality reads were obtained and assembled into 168,212 unigenes, 89,605 of which were extensively annotated. There were 60,582 and 1,362 differentially expressed genes (DEGs) in roots and leaves, respectively. RNA-seq results were further validated by quantitative RT-PCR. Based on GO terms, the unigenes were mainly involved in cell, binding and metabolic process. KEGG pathway enrichment analysis showed that predominant pathways included ribosome and protein processing in endoplasmic reticulum. Further analysis revealed that sulfur metabolism, glutathione metabolism, selenocompound metabolism and plant hormone signal transduction responded to selenite in tea plant. Additionally, a large number of genes of higher expressions associated with phosphate transporters, sulfur assimilation, antioxidant enzymes, antioxidant substances and responses to ethylene and jasmonic acid were identified. Stress-related plant hormones might play a signaling role in promoting sulfate/selenite uptake and assimilation in tea plant. Moreover, some other Se accumulation mechanisms of tea plant were found. Our study provides a possibility for controlling Se accumulation in tea plant through bio-technologies and will be helpful for breeding new tea cultivars.

Indexed as

Camellia sinensisGene Expression ProfilingGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingPlant ProteinsSeleniumSequence Analysis, RNATranscriptomePlant ProteinsSelenium

Identifiers

PMID29856771
PMCPMC5983420
OpenAlexW2805316992

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.